You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Thanks for making the great tool & writing the detailed tutorial!
I am now using it to help count cells. But I have a question about how to generate the roi.tif in Analyze_ROIs.m. This is the process I inferred: first I generate an ROI channel and combine it into the raw tif image as one single file. After the whole process, I will obtain the transformed tif file, then I split the roi channel out of the transformed tif file. This roi channel itself would be roi.tif. Is it correct? If so, I wonder whether there is available scripts to do this? Thank you!
Yes, that is one way to do it. To merge the ROI channel with histology image, you can either use something like ImageJ or do it in matlab with something like:
Thanks for making the great tool & writing the detailed tutorial!
I am now using it to help count cells. But I have a question about how to generate the
roi.tif
inAnalyze_ROIs.m
. This is the process I inferred: first I generate an ROI channel and combine it into the raw tif image as one single file. After the whole process, I will obtain the transformed tif file, then I split the roi channel out of the transformed tif file. This roi channel itself would beroi.tif
. Is it correct? If so, I wonder whether there is available scripts to do this? Thank you!allenCCF/SHARP-Track/Analyze_ROIs.m
Line 14 in 4fa077d
The text was updated successfully, but these errors were encountered: