manifest.json

{
  "name": "pfile-mr-classifier",
  "label": "GE P-File Metadata Import and Classification",
  "description": "Extracts GE P-File header and generates JSON metadata (.metadata.json) which is saved in Flywheel on the P-File's info object. This gear also attempts to determine the P-File's classification (measurement, intent, etc.) using information about the sequence, as well as heuristics based upon the series description.",
  "maintainer": "Michael Perry <lmperry@stanford.edu>",
  "author": "Michael Perry <lmperry@stanford.edu>",
  "url": "https://github.com/cni/pfile-mr-classifier",
  "source": "https://cni.stanford.edu",
  "cite": "pfile-tools: GE P-File Utilities (https://github.com/njvack/pfile-tools)",
  "license": "BSD-2-Clause",
  "flywheel": "0",
  "version": "2.4.0_23ec2b6",
  "custom": {
    "gear-builder": {
      "image": "stanfordcni/pfile-mr-classifier:2.4.0_23ec2b6",
      "category": "converter"
    },
    "flywheel": {
      "suite": "Curation",
      "classification": {
        "species": [
          "Human"
        ],
        "organ": [
          "Any"
        ],
        "therapeutic_area": [
          "Any"
        ],
        "modality": [
          "MR"
        ],
        "function": [
          "Curation"
        ]
      }
    }
  },
  "config": {
    "timezone": {
      "description": "Time Zone to which all timestamps should be localized. This will set the default time zone in the Gear and thus localize the timestamps to that time zone. Examples: 'UTC', 'America/Los_Angeles', 'America/New_York'. [default = 'America/Los_Angeles'].",
      "type": "string",
      "default": "America/Los_Angeles"
    }
  },
  "inputs": {
    "pfile": {
      "base": "file",
      "type": {
        "enum": [
          "pfile"
        ]
      },
      "description": "Input GE P-File for classification. Input can be .7.zip, .7.gz, or .7."
    }
  }
}