pom.xml

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
	<modelVersion>4.0.0</modelVersion>
	<groupId>de.charite.compbio</groupId>
	<artifactId>jannovar-tutorials</artifactId>
	<version>0.1-SNAPSHOT</version>
	<packaging>pom</packaging>
	<name>Jannovar Tutorials</name>

	<modules>
		<module>jgenecount</module>
		<module>jlink</module>
		<module>jped</module>
		<module>jqc</module>
	</modules>

	<!-- Inherit artifact from SonaType OSS pom.xml Following this article: 
		http://java.dzone.com/articles/deploy-maven-central -->
	<parent>
		<groupId>org.sonatype.oss</groupId>
		<artifactId>oss-parent</artifactId>
		<version>9</version>
	</parent>

	<!-- License Information -->
	<licenses>
		<license>
			<name>3-clause BSD</name>
			<url>http://www.opensource.org/licenses/bsd-license.php</url>
			<distribution>repo</distribution>
		</license>
	</licenses>

	<!-- Developers Information for Maven Central -->
	<developers>
		<developer>
			<name>Peter N Robinson</name>
			<email>peter.robinson@charite.de</email>
			<organization>Charite Universitaetsmedizin Berlin</organization>
			<organizationUrl>http://www.charite.de</organizationUrl>
		</developer>
		<developer>
			<name>Manuel Holtgrewe</name>
			<email>manuel.holtgrewe@charite.de</email>
			<organization>Charite Universitaetsmedizin Berlin</organization>
			<organizationUrl>http://www.charite.de</organizationUrl>
		</developer>
	</developers>

	<properties>
		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
		<log4j.version>2.1</log4j.version>
	</properties>

	<dependencies>
		<!--Logging framework -->
		<dependency>
			<groupId>org.slf4j</groupId>
			<artifactId>slf4j-api</artifactId>
			<version>1.7.7</version>
		</dependency>
		<!-- Logging -->
		<dependency>
			<groupId>org.apache.logging.log4j</groupId>
			<artifactId>log4j-api</artifactId>
			<version>${log4j.version}</version>
		</dependency>
		<dependency>
			<groupId>org.apache.logging.log4j</groupId>
			<artifactId>log4j-core</artifactId>
			<version>${log4j.version}</version>
		</dependency>
	</dependencies>

	<build>
		<plugins>
			<!-- JUnit testing -->
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-surefire-plugin</artifactId>
				<version>2.17</version>
				<configuration>
					<skipTests>false</skipTests>
					<forkCount>3</forkCount>
					<reuseForks>true</reuseForks>
					<argLine>${argLine} -Xms512m -Xmx1024m</argLine>
					<systemPropertyVariables>
					<user.language>en</user.language>
					<user.region>GB</user.region>
					</systemPropertyVariables>
				</configuration>
			</plugin>

			<!-- Javadoc generation. -->
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-javadoc-plugin</artifactId>
				<version>2.9</version>
				<!-- Uncomment this to get the Javadoc to show all members <configuration> 
					<show>private</show> </configuration> -->
			</plugin>

			<!-- Jacoco Coverage Reports -->
			<plugin>
				<groupId>org.jacoco</groupId>
				<artifactId>jacoco-maven-plugin</artifactId>
				<version>0.7.2.201409121644</version>
				<executions>
					<!-- Prepares the property pointing to the JaCoCo runtime agent which 
						is passed as VM argument when Maven the Surefire plugin is executed. -->
					<execution>
						<id>pre-unit-test</id>
						<goals>
							<goal>prepare-agent</goal>
						</goals>
					</execution>
					<!-- Ensures that the code coverage report for unit tests is created 
						after unit tests have been run. -->
					<execution>
						<id>post-unit-test</id>
						<phase>test</phase>
						<goals>
							<goal>report</goal>
						</goals>
					</execution>
				</executions>
			</plugin>

			<!-- Compilation -->
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-compiler-plugin</artifactId>
				<version>3.0</version>
				<configuration>
					<compilerArgument>-Xlint:all</compilerArgument>
					<showWarnings>true</showWarnings>
					<showDeprecation>true</showDeprecation>
					<source>${javaVersion}</source>
					<target>${javaVersion}</target>
				</configuration>
			</plugin>
		</plugins>
	</build>

</project>