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.gitmodules
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[submodule "tests/corpi/ENCODE-DCC/rna-seq-pipeline"]
path = test_corpi/ENCODE-DCC/rna-seq-pipeline
url = https://github.com/ENCODE-DCC/rna-seq-pipeline.git
[submodule "tests/corpi/ENCODE-DCC/wgbs-pipeline"]
path = test_corpi/ENCODE-DCC/wgbs-pipeline
url = https://github.com/ENCODE-DCC/wgbs-pipeline.git
[submodule "test_corpi/ENCODE-DCC/atac-seq-pipeline"]
path = test_corpi/ENCODE-DCC/atac-seq-pipeline
url = https://github.com/ENCODE-DCC/atac-seq-pipeline.git
[submodule "test_corpi/ENCODE-DCC/chip-seq-pipeline2"]
path = test_corpi/ENCODE-DCC/chip-seq-pipeline2
url = https://github.com/ENCODE-DCC/chip-seq-pipeline2.git
[submodule "test_corpi/broadinstitute/viral-ngs"]
path = test_corpi/broadinstitute/viral-ngs
url = https://github.com/broadinstitute/viral-ngs.git
[submodule "test_corpi/DataBiosphere/topmed-workflows"]
path = test_corpi/DataBiosphere/topmed-workflows
url = https://github.com/DataBiosphere/topmed-workflows.git
[submodule "test_corpi/broadinstitute/gtex-pipeline"]
path = test_corpi/broadinstitute/gtex-pipeline
url = https://github.com/broadinstitute/gtex-pipeline.git
[submodule "test_corpi/gatk-workflows/broad-prod-wgs-germline-snps-indels"]
path = test_corpi/gatk-workflows/broad-prod-wgs-germline-snps-indels
url = https://github.com/gatk-workflows/broad-prod-wgs-germline-snps-indels.git
[submodule "test_corpi/gatk-workflows/gatk4-germline-snps-indels"]
path = test_corpi/gatk-workflows/gatk4-germline-snps-indels
url = https://github.com/gatk-workflows/gatk4-germline-snps-indels.git
[submodule "test_corpi/gatk-workflows/five-dollar-genome-analysis-pipeline"]
path = test_corpi/gatk-workflows/five-dollar-genome-analysis-pipeline
url = https://github.com/gatk-workflows/five-dollar-genome-analysis-pipeline.git
[submodule "test_corpi/HumanCellAtlas/skylab"]
path = test_corpi/HumanCellAtlas/skylab
url = https://github.com/HumanCellAtlas/skylab.git
[submodule "test_corpi/dnanexus/dxWDL"]
path = test_corpi/dnanexus/dxWDL
url = https://github.com/dnanexus/dxWDL.git
[submodule "test_corpi/gatk-workflows/gatk4-somatic-snvs-indels"]
path = test_corpi/gatk-workflows/gatk4-somatic-snvs-indels
url = https://github.com/gatk-workflows/gatk4-somatic-snvs-indels.git
[submodule "test_corpi/gatk-workflows/gatk4-cnn-variant-filter"]
path = test_corpi/gatk-workflows/gatk4-cnn-variant-filter
url = https://github.com/gatk-workflows/gatk4-cnn-variant-filter.git
[submodule "tests/bash-tap"]
path = tests/bash-tap
url = https://github.com/illusori/bash-tap.git
[submodule "test_corpi/biowdl/tasks"]
path = test_corpi/biowdl/tasks
url = https://github.com/biowdl/tasks.git
[submodule "test_corpi/biowdl/aligning"]
path = test_corpi/biowdl/aligning
url = https://github.com/biowdl/aligning
[submodule "test_corpi/biowdl/expression-quantification"]
path = test_corpi/biowdl/expression-quantification
url = https://github.com/biowdl/expression-quantification.git
[submodule "test_corpi/biowdl/somatic-variantcalling"]
path = test_corpi/biowdl/somatic-variantcalling
url = https://github.com/biowdl/somatic-variantcalling.git
[submodule "test_corpi/biowdl/small-rna"]
path = test_corpi/biowdl/small-rna
url = https://github.com/biowdl/small-rna.git
[submodule "test_corpi/broadinstitute/warp"]
path = test_corpi/broadinstitute/warp
url = https://github.com/broadinstitute/warp.git