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pyproject.toml
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pyproject.toml
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[build-system]
requires = ["setuptools>=64"]
build-backend = "setuptools.build_meta"
[project]
name = "roiextractors"
version = "0.5.11"
description = "Python module for extracting optical physiology ROIs and traces for various file types and formats"
readme = "README.md"
license = { file = "LICENSE.txt" }
authors = [
{ name = "Heberto Mayorquin" },
{ name = "Szonja Weigl" },
{ name = "Cody Baker" },
{ name = "Ben Dichter", email = "[email protected]" },
{ name = "Alessio Buccino" },
{ name = "Paul Adkisson" },
{ name = "Alessandra Trapani" }
]
keywords = ["ROI", "extraction", "optical physiology"]
classifiers = [
"Intended Audience :: Science/Research",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Operating System :: POSIX :: Linux",
"Operating System :: Microsoft :: Windows",
"Operating System :: MacOS",
"License :: OSI Approved :: BSD License",
]
requires-python = ">=3.9"
dependencies = [
"h5py>=2.10.0",
"pynwb>=2.0.1",
"tqdm>=4.48.2",
"lazy_ops>=0.2.0",
"dill>=0.3.2",
"scipy>=1.5.2",
"psutil>=5.8.0",
"PyYAML",
"lxml",
"packaging"
]
[project.optional-dependencies]
full = [
"tifffile>=2018.10.18",
"scanimage-tiff-reader>=1.4.1.4",
"neuroconv[video]>=0.4.6",
"opencv-python-headless>=4.8.1.78",
"natsort>=8.3.1",
"isx>=1.0.4"
]
test = [
"pytest",
"pytest-cov",
"parameterized==0.8.1",
"spikeinterface>=0.100.7",
"pytest-xdist"
]
docs = [
"Jinja2",
"Sphinx",
"sphinx_rtd_theme",
"readthedocs-sphinx-search",
"sphinx-toggleprompt",
"sphinx-copybutton",
"pydata_sphinx_theme"
]
[project.urls]
"Homepage" = "https://github.com/catalystneuro/roiextractors"
"Documentation" = "https://roiextractors.readthedocs.io//"
"Changelog" = "https://github.com/catalystneuro/roiextractors/blob/main/CHANGELOG.md"
[tool.setuptools.packages.find]
where = ["src"]
[tool.black]
line-length = 120
target-version = ['py37']
include = '\.pyi?$'
extend-exclude = '''
/(
\.toml
|\.yml
|\.txt
|\.sh
|\.git
|\.ini
| \.hg
| \.mypy_cache
| \.tox
| \.venv
| build
| dist
)/
'''