Question re: PFAM domains

[ecerami]

Does anyone recall exactly how we get the PFAM domains for each protein?

I thought it was based on the UniProt canonical sequence.

But, if you compare:

http://bit.ly/2U5UA8U

with https://pfam.xfam.org/protein/P00533

you can notice some of the domains don't line up exactly, e.g. look at the kinase domain.

@jjgao @tmazor any ideas?

[inodb]

@ecerami we are still on an older version of PFAM: genome-nexus/genome-nexus-importer#26

and #5691 (comment)

[ecerami]

ah, tx @inodb --> closing