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INSTALL-APP.md

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Molgenis Installation Instructions

The application can be installed either within the BIBBOX environment or as a stand-alone solution. Installation instructions can be found within the BIBBOX, followed by setup instructions required once the application has been successfully installed.

Installation within in the BIBBOX

Once you've selected the desired App for your BIBBOX instance, you can choose from the available versions, as shown in the following figure.

Screenshot01

Clicking "Install App" will open a new window, as illustrated in the following figure. Here, you can define the necessary entries. Some fields come pre-filled with suggested options, and if left unchanged, these default values will be used as the entries.

Screenshot02

After confirming by clicking "Install," the App will be installed as a BIBBOX instance. Once the installation is complete, you only need to follow a few steps to use the App for the first time, which are described below.

Setup after BIBBOX or stand-alone installation

Start Molgenis

Be patient this can take up to 5 minutes (its a huge app). The last message in the log should be something like this

17-Sep-2021 07:24:16.134 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/usr/local/tomcat/webapps/ROOT]

Log in with the username admin and the password admin.

The default admin login is admin/admin.

Screenshot01

Make all further configuration steps within the Molgenis app.

Further information can be found here https://molgenis.org/ and https://molgenis.gitbook.io/molgenis/.

Add and manage user permissions in the Admin/User Manager Menu.

Screenshot02

Upload your data using the Molgenis EMX format.

Other fromats like .csv and .vcf are also supported and can be nativly uploaded.

Screenshot03

Navigate through your data using the Navigator.

Screenshot04

After the installation

Have a nice ride with the Admins youngtimer.

FINAL