mkdocs.yml

site_name: 'tspex Documentation'
site_url: 'https://apcamargo.github.io/tspex/'
site_description: 'Documentation for tspex, a tissue-specificity calculator'
site_author: 'Antonio Camargo'

repo_name: 'apcamargo/tspex'
repo_url: 'https://github.com/apcamargo/tspex'

nav:
  - Home: 'index.md'
  - Tissue-specificity metrics: 'metrics.md'
  - Python API: 'python_api.ipynb'
  - Command-line interface (CLI): 'cli.md'

theme:
  name: 'material'
  palette:
    primary: 'White'
    accent: 'Light Blue'
  font:
    text: 'Nunito Sans'
    code: 'Fira Mono'
  logo:
    icon: 'book'

markdown_extensions:
  - 'admonition'
  - 'footnotes'
  - 'codehilite'
  - 'pymdownx.arithmatex'

plugins:
  - 'search'
  - 'mknotebooks'

extra_css:
  - 'extra.css'

extra_javascript:
  - 'https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.0/MathJax.js?config=TeX-MML-AM_CHTML'

extra:
  social:
    - type: 'github-alt'
      link: 'https://github.com/apcamargo/'