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SON decoding error while loading cookiecutter.json #4

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MeHelmy opened this issue Apr 17, 2020 · 4 comments
Open

SON decoding error while loading cookiecutter.json #4

MeHelmy opened this issue Apr 17, 2020 · 4 comments

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@MeHelmy
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MeHelmy commented Apr 17, 2020

Hi!

Thank you for your effort.

using

git clone https://github.com/Snakemake-Profiles/generic.git
cookiecutter generic

Leads to this error:
cookiecutter.exceptions.ContextDecodingException: JSON decoding error while loading "generic/cookiecutter.json". Decoding error details: "Expecting property name enclosed in double quotes: line 5 column 1 (char 89)"

Thanks,
Medhat

@SilasK
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SilasK commented Apr 17, 2020

I continued to work on in here

Could you try:

mkdir -p ~/.config/snakemake
cd ~/.config/snakemake
cookiecutter https://github.com/metagenome-atlas/clusterprofile.git
```

You don't need to clone the repo first. 

@MeHelmy
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MeHelmy commented Apr 20, 2020

Your idea is good, but I have limited space in my home directory, so I need to download every thing in a separate location (I will also read the other repo and see if I can use the profile there).

@SilasK
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SilasK commented Apr 20, 2020 via email

@MeHelmy
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MeHelmy commented Apr 21, 2020

Yes I did, thank you for your help @SilasK

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