diff --git a/.github/config_schema.py b/.github/config_schema.py index b268f63..46870da 100644 --- a/.github/config_schema.py +++ b/.github/config_schema.py @@ -11,7 +11,7 @@ def get_args(): """Set up command-line interface and get arguments.""" parser = argparse.ArgumentParser() parser.add_argument('-c', '--config_path', metavar="", - required=True, help='path to schematic config ymal file') + required=True, help='path to schematic config yaml file') parser.add_argument('-sr', '--service_repo', metavar="", help='repo path to service') parser.add_argument('-o', '--out_dir', default='www', metavar="", diff --git a/VEOIBD/dca-template-config.json b/VEOIBD/dca-template-config.json index 0b14089..9deb4cb 100644 --- a/VEOIBD/dca-template-config.json +++ b/VEOIBD/dca-template-config.json @@ -9,31 +9,6 @@ "display_name": "Biospecimen Metadata Template", "schema_name": "BiospecimenMetadataTemplate", "type": "record" - }, - { - "display_name": "Bulk RNAseq Assay Template", - "schema_name": "BulkRNAseqAssayTemplate", - "type": "record" - }, - { - "display_name": "scRNAseq Assay Template", - "schema_name": "ScRNAseqAssayTemplate", - "type": "record" - }, - { - "display_name": "Bulk RNAseq Raw File Annotations", - "schema_name": "BulkRNAseqRawFileAnnotations", - "type": "file" - }, - { - "display_name": "Bulk RNASeq Counts File Annotations", - "schema_name": "BulkRNASeqCountsFileAnnotations", - "type": "file" - }, - { - "display_name": "Metadata File Annotations", - "schema_name": "MetadataFileAnnotations", - "type": "file" } ], "service_version": "v23.1.1", diff --git a/VEOIBD/dca_config.json b/VEOIBD/dca_config.json index 70e8b4b..76eabbf 100644 --- a/VEOIBD/dca_config.json +++ b/VEOIBD/dca_config.json @@ -22,13 +22,13 @@ "use_annotations": false }, "model_validate": { - "restrict_rules": true + "restrict_rules": false }, "model_submit": { "use_schema_labels": true, - "table_manipulation": "upsert", + "table_manipulation": "replace", "manifest_record_type": "file_only", "hide_blanks": false } } -} +} \ No newline at end of file