2.2.1 (2024-07-26)
- also enlist ref for juno mapping (c6856d6)
2.2.0 (2024-07-25)
- allow list as input type (254e1c8)
2.1.3 (2024-02-09)
- catch error if sample has multiple libraries (cff035a)
- error message (b66b9d5)
- parse illumina library correctly (2fd54a7)
2.1.2 (2024-01-25)
- restrict snakemake to v7 (393726c)
2.1.0 (2023-07-04)
- add enlisting of bam and reference (4ef4be6)
- add vcf input files for mapping pipelines (cf98af3)
- include vcf in tests (cdcef21)
- correct vcf directory name (6512211)
- Fix juno_metadata not existing (9a478dd)
- fix unit test (ba8eee1)
- include vcf in checks (3e73986)
2.0.1 (2023-04-18)
- Make sure library also works in python 3.8 (fb9e7f6)
2.0.0 (2023-03-23)
- Move snakemake args to dict
- Add no-containers flag (9a5e33a)
- Make filepaths absolute (375c661)
- Move snakemake args to dict (afcd5d8)
- Add docstrings to new functions (fec95b9)
- Update dependencies (74db4f5)
1.0.1 (2023-02-02)
- Add py.typed (d49c3a6)
1.0.0 (2023-02-02)
- Remove class abstraction in helper_functions
- Add checks in github actions (ff6e986)
- Add mypy checking (754fe4d)
- Add release please (47e317b)
- Add run script (739d9d1)
- Add extra kwargs functionality to RunSnakemake (14ef3e7)
- Add kw_only=True for inheritance (c88f33c)
- Add openpyxl stubs to github action (6080082)
- Add RunSnakemake to init.py (a3b288b)
- Add type stubs to github action (2e0b2db)
- Change regex to string literal (c156c64)
- Fix github actions (9ec06fb)
- Fix library tests (64a5f2a)
- Fix main env and library_tests (0f21c89)
- Fix mypy checks (554c676)
- Fix previous commit (07e6d1f)
- Fix previous commit install (9299279)
- Fix setuptools versions in env (93f215a)
- Fix the main conda env (5eda41c)
- Fix unit tests for github actions (0009194)
- Fix up module structure (4c9adb1)
- Remove conda env in github action (3087ee4)
- Remove stuff from github action (9890d45)
- Update env location in github workflow (b6b8fec)
- Update mamba version (3686131)
- Use mamba in github action (247947b)
- Remove class abstraction in helper_functions (0f7b045)
- release 1.0.0 (9c0b8fa)
1.0.0 (2023-02-01)
- Remove class abstraction in helper_functions
- Add checks in github actions (ff6e986)
- Add mypy checking (754fe4d)
- Add release please (47e317b)
- Add run script (739d9d1)
- Add extra kwargs functionality to RunSnakemake (14ef3e7)
- Add kw_only=True for inheritance (c88f33c)
- Add openpyxl stubs to github action (6080082)
- Add RunSnakemake to init.py (a3b288b)
- Add type stubs to github action (2e0b2db)
- Change regex to string literal (c156c64)
- Fix github actions (9ec06fb)
- Fix library tests (64a5f2a)
- Fix main env and library_tests (0f21c89)
- Fix mypy checks (554c676)
- Fix previous commit (07e6d1f)
- Fix previous commit install (9299279)
- Fix setuptools versions in env (93f215a)
- Fix the main conda env (5eda41c)
- Fix unit tests for github actions (0009194)
- Fix up module structure (4c9adb1)
- Remove conda env in github action (3087ee4)
- Remove stuff from github action (9890d45)
- Update env location in github workflow (b6b8fec)
- Update mamba version (3686131)
- Use mamba in github action (247947b)
- Remove class abstraction in helper_functions (0f7b045)