DESCRIPTION

Package: CDSeq
Type: Package
Title: A Complete Deconvolution Method using Sequencing Data
Depends: R (>= 3.6.0)
biocViews:
Version: 1.0.9
Date: 2021-03-12
Authors@R: c(person("Kai", "Kang", email = "kangkai0714@gmail.com", role = c("aut", "cre","cph")),
             person("Caizhi", "Huang", email = "chuang19@ncsu.edu", role = "aut"),
             person("Qian","Meng", role="ctb"), 
             person("Igor","Shats", role="ctb"),
             person("Melissa","Li", role="ctb"),
             person("David","Umbach",role="ctb"),
             person("Leping","Li", role=c("aut","cph")),
             person("Yuanyuan","Li", role="ctb"),
             person("Xiaoling","Li", role="ctb"))
Maintainer: Kai Kang <kangkai0714@gmail.com>
Description: Estimate cell-type-specific gene expression profiles and sample-specific cell-type proportions simultaneously using bulk sequencing data. Kang et al. (2019) <doi:10.1371/journal.pcbi.1007510>. 
License: GPL-3
Imports: 
    Rcpp (>= 1.0.3),
    MASS,
    foreach,
    doParallel,
    dirmult,
    RcppThread,
    iterators,
    parallel,
    grDevices,
    Seurat,
    ggplot2,
    magrittr,
    dplyr,
    rlang,
    Matrix,
    matrixStats,
    ggpubr,
    pheatmap,
    harmony
Remotes: github::PelzKo/harmony
LinkingTo: Rcpp, 
           RcppArmadillo, 
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Suggests: 
    gplots,
    clue,
    Biobase,
    qlcMatrix,
    knitr,
    rmarkdown,
    testthat (>= 3.0.0)
VignetteBuilder: knitr
URL: https://github.com/kkang7/CDSeq_R_Package, https://doi.org/10.1371/journal.pcbi.1007510 
BugReports: https://github.com/kkang7/CDSeq_R_Package/issues
Config/testthat/edition: 3