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ModuleNotFoundError: No module named 'cwl_utils.parser_v1_2' #105

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ntachukwu opened this issue Nov 17, 2021 · 1 comment
Open

ModuleNotFoundError: No module named 'cwl_utils.parser_v1_2' #105

ntachukwu opened this issue Nov 17, 2021 · 1 comment

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@ntachukwu
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after installing janis pipelines. Running janisdk fromcwl bwamem.cwl gives the error
ModuleNotFoundError: No module named 'cwl_utils.parser_v1_2'

I believe the cwl_utils module has a different file structure. check cwl_utils.parser.cwl_v1_2
@rlupat
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rlupat commented Nov 19, 2021 •
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Hi @Th3nn3ss - thanks for letting us know.
I just pushed the changes to pin cwl-utils to v0.11
As you said, the latest release of cwl_utils has a different structure.

This should fix the issue for now. I'll look into updating the modules in the coming days.

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@rlupat @ntachukwu