files missing from ants_2.3.4_20200811.sif

[Matte16]

Hi Neurodesk gurus,

I have noticed that there are some files missing from ants_2.3.4_20200811.sif , e.g., antsCookTemplatePriors.sh

In fact, ants_2.3.4_20200811.sif has ~123 files, whereas my local ants installation (albeit 2.3.1) has ~164 files.

Can you look into this, please?

Regards,

Matt

[stebo85]

Dear matt, Thank you for finding this. I have a look at it today :) Cheers Steffen

…

On Thu, Dec 2, 2021, 10:41 AM Matte16 ***@***.***> wrote: Hi Neurodesk gurus, I have noticed that there are some files missing from ants_2.3.4_20200811.sif , e.g., antsCookTemplatePriors.sh In fact, ants_2.3.4_20200811.sif has ~123 files, whereas my local ants installation (albeit 2.3.1) has ~164 files. Can you look into this, please? Regards, Matt — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#58>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AA6V2WZQKWXPORZNDJ2AQ2TUO26D5ANCNFSM5JF2VVBQ> .

[Matte16]

No worries - thanks Steffan 😉 Matt

________________________________ From: Steffen Bollmann ***@***.***> Sent: Thursday, 2 December 2021 11:43 AM To: NeuroDesk/neurodesk.github.io ***@***.***> Cc: Matthew Hughes ***@***.***>; Author ***@***.***> Subject: Re: [NeuroDesk/neurodesk.github.io] files missing from ants_2.3.4_20200811.sif (Discussion #58) Dear matt, Thank you for finding this. I have a look at it today :) Cheers Steffen

On Thu, Dec 2, 2021, 10:41 AM Matte16 ***@***.***> wrote: Hi Neurodesk gurus, I have noticed that there are some files missing from ants_2.3.4_20200811.sif , e.g., antsCookTemplatePriors.sh<http://antsCookTemplatePriors.sh> In fact, ants_2.3.4_20200811.sif has ~123 files, whereas my local ants installation (albeit 2.3.1) has ~164 files. Can you look into this, please? Regards, Matt — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#58>>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AA6V2WZQKWXPORZNDJ2AQ2TUO26D5ANCNFSM5JF2VVBQ<https://github.com/notifications/unsubscribe-auth/AA6V2WZQKWXPORZNDJ2AQ2TUO26D5ANCNFSM5JF2VVBQ>> .

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub<#58 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ANJD6T7USB54DTPOENJEJFDUO26LJANCNFSM5JF2VVBQ>. Triage notifications on the go with GitHub Mobile for iOS<https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android<https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>.

[civier]

I've just checked ants_2.3.4_20210104 and it has around 130, so still not good. The version Matt is using is an old one because he's running it on our supercomputer, and we do not update the packages there often. Best, Oren

…

On Thu, Dec 2, 2021 at 11:45 AM Matte16 ***@***.***> wrote: No worries - thanks Steffan 😉 Matt ________________________________ From: Steffen Bollmann ***@***.***> Sent: Thursday, 2 December 2021 11:43 AM To: NeuroDesk/neurodesk.github.io ***@***.***> Cc: Matthew Hughes ***@***.***>; Author ***@***.***> Subject: Re: [NeuroDesk/neurodesk.github.io] files missing from ants_2.3.4_20200811.sif (Discussion #58) Dear matt, Thank you for finding this. I have a look at it today :) Cheers Steffen On Thu, Dec 2, 2021, 10:41 AM Matte16 ***@***.***> wrote: > Hi Neurodesk gurus, > > I have noticed that there are some files missing from > ants_2.3.4_20200811.sif , e.g., antsCookTemplatePriors.sh< http://antsCookTemplatePriors.sh> > > In fact, ants_2.3.4_20200811.sif has ~123 files, whereas my local ants > installation (albeit 2.3.1) has ~164 files. > > Can you look into this, please? > > Regards, > > Matt > > — > You are receiving this because you are subscribed to this thread. > Reply to this email directly, view it on GitHub > <#58< #58>>, or > unsubscribe > < https://github.com/notifications/unsubscribe-auth/AA6V2WZQKWXPORZNDJ2AQ2TUO26D5ANCNFSM5JF2VVBQ < https://github.com/notifications/unsubscribe-auth/AA6V2WZQKWXPORZNDJ2AQ2TUO26D5ANCNFSM5JF2VVBQ>> > . > — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub< #58 (comment)>, or unsubscribe< https://github.com/notifications/unsubscribe-auth/ANJD6T7USB54DTPOENJEJFDUO26LJANCNFSM5JF2VVBQ>. Triage notifications on the go with GitHub Mobile for iOS< https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android< https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#58 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AB7FUI4J6KFU5PLMMQKC6OTUO26TFANCNFSM5JF2VVBQ> . Triage notifications on the go with GitHub Mobile for iOS <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>.

[stebo85]

Dear @Matte16

ants 2.3.4 doesn't contain antsCookTemplatePriors.sh anymore. It is available in 2.3.1 and I now added this to neurodesk as well. Are you sure that antsCookTemplatePriors.sh is not deprecated and should be available in 2.3.4?

Kind regards
Steffen

[stebo85]

@Matte16 - I did a bit more investigation and it looks the script still exists https://github.com/ANTsX/ANTs/tree/master/Scripts but is currently not installed by default. I see if I can change that :)

[stebo85]

@Matte16 - I fixed this bug in the latest version of Neurodesk: vnmd/neurodesktop:20211220

These are the updated singularity containers:
"apps": {
"ants 2.3.1": {
"version": "20211204",
},
"ants 2.3.4": {
"version": "20211212",
},
"ants 2.3.5": {
"version": "20211212",
}