diff --git a/content/en/tutorials-examples/tutorials/spectroscopy/mrsiproc.md b/content/en/tutorials-examples/tutorials/spectroscopy/mrsiproc.md index 3ad43dddc..45c2895f6 100644 --- a/content/en/tutorials-examples/tutorials/spectroscopy/mrsiproc.md +++ b/content/en/tutorials-examples/tutorials/spectroscopy/mrsiproc.md @@ -39,13 +39,13 @@ bash Part2_EvaluateMRSI.sh [ARGUMENTS] After starting Neurodesk, a JupyterLab instance should open. You can either work from here or open a desktop environment by clicking `Neurodesktop` under `Notebooks`. This tutorial uses the desktop. -![JupyterLab](../../../../../static/tutorials-examples/tutorials/spectroscopy/mrsiproc/jupyterlab.png 'JupyterLab') +![JupyterLab](/static/tutorials-examples/tutorials/spectroscopy/mrsiproc/jupyterlab.png 'JupyterLab') ## Running MRSI reconstruction Open vscode and create and open a new folder under `neurodesktop-storage` -![Open Folder](../../../../../static/tutorials-examples/tutorials/spectroscopy/mrsiproc/open_folder.png 'Open Folder') +![Open Folder](/static/tutorials-examples/tutorials/spectroscopy/mrsiproc/open_folder.png 'Open Folder') {{< alert title="Info" >}} @@ -152,7 +152,13 @@ Then run the script with bash run_mrsi_part1.sh ``` +![Run MRSI](/static/tutorials-examples/tutorials/spectroscopy/mrsiproc/run_mrsi.png 'Run MRSI') +This can take several hours for reconstruction and LCModel processing. + +## Part 2 + +Continue with the same process for part 2 Template file for part 2 ``` diff --git a/static/tutorials-examples/tutorials/spectroscopy/mrsiproc/run_mrsi.png b/static/tutorials-examples/tutorials/spectroscopy/mrsiproc/run_mrsi.png new file mode 100644 index 000000000..83bf8a6e4 Binary files /dev/null and b/static/tutorials-examples/tutorials/spectroscopy/mrsiproc/run_mrsi.png differ