From f1dad95830fff94a1a4ec001ac10cf45122b7fed Mon Sep 17 00:00:00 2001
From: Neurodesk Github Action Runner <mail.neurodesk@gmail.com>
Date: Thu, 5 Dec 2024 04:34:32 +0000
Subject: [PATCH] might work

---
 recipes/nighres/build.sh | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/recipes/nighres/build.sh b/recipes/nighres/build.sh
index e7e01b01..f6fee711 100644
--- a/recipes/nighres/build.sh
+++ b/recipes/nighres/build.sh
@@ -19,7 +19,10 @@ neurodocker generate ${neurodocker_buildMode} \
    --env JCC_JDK=/opt/jdk-temurin-20.0.1 \
    --env JAVAHOME=/opt/jdk-temurin-20.0.1 \
    --env PATH='$PATH':/opt/jdk-temurin-20.0.1/bin \
-   --run="pipx install JCC nipype pandas nilearn" \
+   --run="python3 -m venv /opt/python-venv/" \
+   --env PATH=/opt/python-venv/bin:'$PATH' \
+   --run="pip install nipype pandas nilearn JCC matplotlib" \
+   --run="python3 -m pip install --upgrade setuptools wheel " \
    --workdir /opt \
    --run="git clone https://github.com/nighres/nighres.git \
          && cd nighres \