diff --git a/_sources/diffusion_imaging/MRtrix_Preprocessing.ipynb b/_sources/diffusion_imaging/MRtrix_Preprocessing.ipynb index 4ceb4bf8..3cddd0ec 100644 --- a/_sources/diffusion_imaging/MRtrix_Preprocessing.ipynb +++ b/_sources/diffusion_imaging/MRtrix_Preprocessing.ipynb @@ -405,7 +405,7 @@ } ], "source": [ - "! mrconvert sub-CON02_ses-preop_acq-AP_dwi.nii.gz sub-02_dwi.mif -fslgrad sub-CON02_ses-preop_acq-AP_dwi.bvec sub-CON02_ses-preop_acq-AP_dwi.bval" + "! mrconvert sub-CON02_ses-preop_acq-AP_dwi.nii.gz ds001226/sub-CON02/ses-preop/dwi/sub-02_dwi.mif -fslgrad sub-CON02_ses-preop_acq-AP_dwi.bvec sub-CON02_ses-preop_acq-AP_dwi.bval" ] }, { diff --git a/diffusion_imaging/MRtrix_Preprocessing.html b/diffusion_imaging/MRtrix_Preprocessing.html index 2e994725..3735211e 100644 --- a/diffusion_imaging/MRtrix_Preprocessing.html +++ b/diffusion_imaging/MRtrix_Preprocessing.html @@ -783,7 +783,7 @@

Looking at the Data
-
! mrconvert sub-CON02_ses-preop_acq-AP_dwi.nii.gz sub-02_dwi.mif -fslgrad sub-CON02_ses-preop_acq-AP_dwi.bvec sub-CON02_ses-preop_acq-AP_dwi.bval
+
! mrconvert sub-CON02_ses-preop_acq-AP_dwi.nii.gz ds001226/sub-CON02/ses-preop/dwi/sub-02_dwi.mif -fslgrad sub-CON02_ses-preop_acq-AP_dwi.bvec sub-CON02_ses-preop_acq-AP_dwi.bval