diff --git a/README.md b/README.md index 3cb8d74d4..8e3a924e3 100644 --- a/README.md +++ b/README.md @@ -11,7 +11,7 @@ If you're planning to create a new example notebook, please follow these steps: 2. Create a New Notebook: Make sure your notebook runs as expected. This includes sections for the introduction, data preparation, analysis, results. -3. Add an entry to table of content: Once your pull request is merged, you can add an entry to the `books/_toc.yml` file. This will add your notebook to the table of contents on the main page. +3. Add an entry to table of content: To have your notebook rendered, you need to add an entry to the `books/_toc.yml` file. This will add your notebook to the table of contents on the main page. 4. Save and Submit: Once you're done, save your notebook and submit it for review. You can do this by creating a pull request on our GitHub repository. diff --git a/books/_toc.yml b/books/_toc.yml index 570b8d776..538a65a9c 100644 --- a/books/_toc.yml +++ b/books/_toc.yml @@ -23,4 +23,8 @@ parts: chapters: - file: functional_imaging/nipype_fsl_all_levels_flanker - file: functional_imaging/fmriprep_example + - file: functional_imaging/first_and_second_level_spm + - caption: "Workflow" + chapters: + - file: workflows/Nipype_on_NeuroDesk_RISE diff --git a/books/functional_imaging/first_and_second_level_spm.ipynb b/books/functional_imaging/first_and_second_level_spm.ipynb index 21a431c5d..11eb3d4f8 100644 --- a/books/functional_imaging/first_and_second_level_spm.ipynb +++ b/books/functional_imaging/first_and_second_level_spm.ipynb @@ -846,17 +846,9 @@ }, { "cell_type": "code", - "execution_count": 23, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "name": "stderr", - "output_type": "stream", - "text": [ - "stty: 'standard input': Inappropriate ioctl for device\n" - ] - } - ], + "outputs": [], "source": [ "# Level1Design - Generates an SPM design matrix\n", "level1design = Node(spm.Level1Design(bases={'hrf':{'derivs': [0,0]}}, # no derivatives\n", diff --git a/books/workflows/Nipype_on_NeuroDesk_RISE.ipynb b/books/workflows/Nipype_on_NeuroDesk_RISE.ipynb index 968f1777c..430f431e7 100644 --- a/books/workflows/Nipype_on_NeuroDesk_RISE.ipynb +++ b/books/workflows/Nipype_on_NeuroDesk_RISE.ipynb @@ -3336,7 +3336,7 @@ "metadata": { "celltoolbar": "Slideshow", "kernelspec": { - "display_name": "Python [conda env:root] *", + "display_name": "Python 3", "language": "python", "name": "python3" },