RPATH Issue (?)

[rmclaren]

On HERA, when loading Emilies modules (source /home/Emily.Liu/modules/env_jedi.sh) we have to manually set the LD_LIBRARY_PATH to the build/lib directory because otherwise it will not find the libbufr_query.so object file.

I believe this is necessary because the RPATH is not set up correctly for some reason (??). Need to investigate and fix this somehow...

[emilyhcliu]

Do not use env_jedi.sh. This script only associates modules for JEDI.

Use ~Emily.Liu/modules/env_obsforge.sh

module purge

export obsforge_dir="/scratch1/NCEPDEV/da/Emily.Liu/EMC-obsForge/obsForge"

module use ${obsforge_dir}/modulefiles
module load obsforge/hera.intel

# ==============================
# Set bufr-query python library
# ==============================
export LD_LIBRARY_PATH="${obsforge_dir}/build/lib:${LD_LIBRARY_PATH}"
export PYTHONPATH="${PYTHONPATH}:${obsforge_dir}/build/lib/python3.10/site-packages"

# ========================
# Set ioda python library
# =========================
export PYTHONPATH="${PYTHONPATH}:${obsforge_dir}/build/lib/python3.10"

# ============
# Set wxfloww 
# ============
export PYTHONPATH="${PYTHONPATH}:${obsforge_dir}/sorc/wxflow/src"

This env_obsforge.sh will make sure all libraries in obsForge are available for you.

source ~Emily.Liu/modules/env_obsforge.sh

show_queries.x -h

Description: 
  Lists all the queries possible on a BUFR file per subset.
Arguments: 
  -h          (Optional) Print out the help message.
  -s <subset> (Optional) Print paths only for this subset.
  input_file  Path to the BUFR file.
  output_file  (Optional) Save the output. 
  -t <table_path>  (Optional) Path to the WMO table file.
Examples: 
  ./show_queries.x ../data/bufr_satwnd_old_format.bufr
  ./show_queries.x -s NC005066 ../data/bufr_satwnd_old_format.bufr