_quarto.yml

project:
  type: website
  output-dir: docs

website:
  title: BigPicture
  favicon: favicon.ico
  description: >
    A central repository of digital pathology slides from biomedical research projects to boost the development of artificial intelligence
  image: images/bp-logo.png
  page-footer:
    background: light

  page-navigation: true
  navbar:
    title: false
    logo: images/bp-logo-one-line.png
    logo-alt: BigPicture
    background: light
    collapse-below: lg
    pinned: true
    left:
      - href: index.qmd
        text: Home
      - text: Datasets
        menu:
          - href: https://nbisweden.github.io/datasets.bp.nbis.se/
            text: Browse
          - href: datasets/search/index.qmd
            text: Search
          - href: datasets/download/downloading-data.qmd
            text: Download
          - href: datasets/submission/index.qmd
            text: Submission
          
      - text: Algorithms
        menu:
          - href: algorithms/browse/index.qmd
            text: Browse
          - href: algorithms/try/index.qmd
            text: Try
          - href: algorithms/benchmark/index.qmd
            text: Benchmark
          - href: algorithms/submit/index.qmd
            text: Submit


      - text: Compute
        menu:
          - href: compute/analysis/index.qmd
            text: Analysis
          - href: compute/ai-training/index.qmd
            text: AI Training

      - text: Software
        href: https://doc.cytomine.com#/
      

      - text: Metrics
        href: metrics/index.qmd

  
  sidebar:
    - id: submit
      title: Submission
      style: floating
      collapse-level: 2
      align: left
      contents:
        - datasets/submission/index.qmd
        - datasets/submission/preparation-guide.qmd
        - datasets/submission/submission-guide.qmd
    
    - id: access
      title: Access
      style: floating
      collapse-level: 2
      align: left
      contents:
        - download/downloading-data.qmd

format:
  html:
    theme:
      - cosmo
      - custom.scss
    code-copy: true
    code-overflow: wrap
    toc: true