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TOPAS-bioSAXS-dosimetry

  1. Description:

Models for TOPAS/Geant4 to estimate the microscopic dose received by biomolecules during bioSAXS experiments.

The C++ classes in this repository extend the functionality of the TOPAS (http://www.topasmc.org/) Monte-Carlo program, which is itself a wrapper of the Geant4 MCS Toolkit (http://geant4.org).

  1. Installation:

Installation:

Navigate to the TOPAS extension directory:

cd ~/topas_extensions/

Clone or download the sourcecode into your TOPAS extension directory:

git clone https://github.com/MarcBHahn/TOPAS-bioSAXS-dosimetry.git

Change to your topas directory:

cd ~/Topas/

Install it:

cmake ./ -DTOPAS_EXTENSIONS_DIR=~/topas_extensions/TOPAS-bioSAXS-dosimetry && make -j4

  1. Description:

A simple model to determine microscopic doses in the target volume of biomolecules received during bioSAXS experiments. [1] Details can be found in

  1. Usage:

Examples can be found in the "examples/" directory.

  1. Bugs:

Please report bugs to [email protected] or on https://github.com/MarcBHahn/TOPAS-bioSAXS-dosimetry/

  1. Literature:

If you use this extension please cite the following literature:

[1] Hahn et al. Phys. Rev. E 95, 052419 https://journals.aps.org/pre/abstract/10.1103/PhysRevE.95.052419

  1. Etc:

Tags: topas topasmc topasmcs topas-mc topas-mcs topas-nbio mcs geant4 geant4-dna