Exception raised when attempting successive checkpoint restarts #113
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emarinri
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…nctionalty but skip for now.
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When successive simulation restarts where attempted, an exception was raised due to the expectation of a comment line two lines after the '# Start Type' keyword in the input file. This was problematic in the GEMC ensemble, that has two boxes.
The current fix replaces non-comment lines with empty strings in lines between the 'checkpoint' line and the next Cassandra keyword '# Start_Type'.
Additionally, tests that used GMSO Topology objects are skipped for now until the full functionality is implemented.