docker-compose.yaml

# you need a recent version of Docker compose
version: '3.1'


# these variables are set in init.sh (change storage location there)
#
# set TAG to specify docker image version
# set CONFIGDIR to path to config
# set SHOCKDIR for persistent Shock data store , e.g. /var/tmp/Shock
# set DATADIR for persistent data store , e.g. /var/tmp
# set LOGDIR to path to local log dir
# set DOCKER_BINARY to the path of the docker client binary (Linux binary, not OSX/Windows)
# set CWL_DIR for location of demo workflow

services:

    # the SHOCK object store
    # to make SHOCK data persistent uncomment the lines here and in "mongo" below
    shock:
        image: mgrast/shock
        extra_hosts:
          - "skyport.local:${SKYPORT_DOCKER_GATEWAY}"
        depends_on:
          - mongo
        entrypoint:
          - /go/bin/shock-server
          - --conf
          - /shock-config/shock-server.cfg
        volumes:
          - ${CONFIGDIR}/Shock/shock-server.container.cfg:/shock-config/shock-server.cfg
          - ${LOGDIR}/shock:/var/log/shock
          # remove the comment below to make SHOCK data persistent
          #- ${SHOCKDIR}/data:/usr/local/shock
        ports:
          - 7445:7445
          - 8083:80

    # web frontend for the shock browser
    shock-browser:
      extra_hosts:
        - "skyport.local:${SKYPORT_DOCKER_GATEWAY}"
      image: mgrast/shock-browser:${TAG}
      depends_on:
        - shock
        - auth-server
      volumes:
        - ${CONFIGDIR}/ShockBrowser/config.js:/usr/share/nginx/html/js/config.js

    # local Oauth2 server for user, password and tokens
    # to make Auth data persistent make the MySQL DB persistent
    auth-server:
        image: mgrast/authserver:develop
        extra_hosts:
          - "skyport.local:${SKYPORT_DOCKER_GATEWAY}"
        environment:
            MYSQL_HOST: auth-mysql
            MYSQL_DATABASE: DemoAppUsers
            MYSQL_USER: authService
            MYSQL_PASSWORD: authServicePassword
        depends_on:
          - auth-mysql
        volumes:
          #- ${CONFIGDIR}/authServer/httpd.conf:/usr/local/apache2/conf/httpd.conf:ro
          - ${CONFIGDIR}/authServer/perl/:/usr/local/lib/site_perl:ro
          - ${CONFIGDIR}/authServer/cgi/:/usr/local/apache2/cgi-bin/:ro
          #- ${CONFIGDIR}/authServer/dbsetup.demo.mysql:/tmp/dbsetup.demo.mysql:ro
        ports:
          - 8081:80

    # AWE resource manager
    # uncomment AWEDIR to make data and logs persistent (also requires AWE-mongo for full persistence)
    awe-server:
        image: mgrast/awe:${TAG}
        extra_hosts:
          - "skyport.local:${SKYPORT_DOCKER_GATEWAY}"
        entrypoint:
          - /go/bin/awe-server
          - --conf=/awe-config/awe-server.cfg
        depends_on:
          - awe-mongo
          - auth-server
        ports:
          - 8001
          - 8081
        volumes:
          - ${CONFIGDIR}/AWE/awe-server.conf:/awe-config/awe-server.cfg:ro
          - ${CONFIGDIR}/authServer/httpd.conf:/usr/local/apache2/conf/httpd.conf:ro
          #- ${AWEDIR}:/mnt/data/awe/


    # the AWE worker that will execute the workflow steps
    # the data and logs for the awe worker are persistent in this configuration
    awe-worker:
        image: mgrast/awe-worker:${TAG}
        # worker needs to wait for AWE-server to start up
        extra_hosts:
          - "skyport.local:${SKYPORT_DOCKER_GATEWAY}"
        entrypoint:
          - ash 
          - -c
          - 'while [ $$(nc -z awe-server 8001 ; echo $$?) != 0 ] ; do echo "wait..." ; sleep 2 ; done ;
            /go/bin/awe-worker
            --name compose_worker-1
            --data=${DATADIR}/awe-worker/data
            --logs=/mnt/data/logs
            --workpath=${DATADIR}/awe-worker/work
            --serverurl=http://awe-server:8001
            --group=docker
            --supported_apps=*
            --auto_clean_dir=false
            --debuglevel=0'
        depends_on:
          - awe-server
        restart: on-failure
        volumes:
          - /tmp:/tmp
          - ${CONFIGDIR}/AWE/awe-worker.cfg:/awe-config/awe-worker.cfg:ro
          - ${DATADIR}/awe-worker:${DATADIR}/awe-worker
          - ${LOGDIR}/awe-worker/:/mnt/data/logs
          # mount the binary we have downloaded with the init.sh command
          - ${DOCKER_BINARY}:/usr/local/bin/docker
          # mount the docker socker to allow container to execute docker commands (for CWL runner)
          - /var/run/docker.sock:/var/run/docker.sock

    
    awe-monitor:
      image: mgrast/awe-monitor
      extra_hosts:
        - "skyport.local:${SKYPORT_DOCKER_GATEWAY}"
      environment:
        AUTH_URL: "http://skyport.local:8001/auth/cgi-bin"
        APPLICATION_NAME: AWE
        APPLICATION_URL: "http://skyport.local:8001/awe/monitor/"
        APPLICATION_SECRET: "abXYffLyDabuyxXN8vstbsaMdNwpMKfk" 
      command: ['httpd', '-DFOREGROUND','-C' , 'Define servername http://skyport.local:8001/awe/monitor']
      depends_on:
        - awe-server
      volumes:
        - ${CONFIGDIR}/awe-monitor/config.js:/usr/local/apache2/htdocs/js/config.js
      ports:
        - 80
        
        
    # api for submission of demo workflow (part of demo-app)
    demo-app-api:
        image: mgrast/demo-app-api:latest
        extra_hosts:
          - "skyport.local:${SKYPORT_DOCKER_GATEWAY}"
        environment:
          CWL_DIR:
          AWE_SERVER_URL:
          SHOCK_SERVER_URL:
          SKYPORT_DOCKER_GATEWAY:
        ports:
          - 5000:5000
        depends_on:
          - awe-server
          - shock
        volumes:
          - /tmp/:/host_tmp
          - ${DOCKER_BINARY}:/usr/local/bin/docker
          - /var/run/docker.sock:/var/run/docker.sock

    # UI for demo-app
    demo-app-web:
        image: mgrast/demo-app:latest
        extra_hosts:
          - "skyport.local:${SKYPORT_DOCKER_GATEWAY}"
        environment:
          CWL_DIR: ${CWL_DIR}
        depends_on:
          - demo-app-api
        volumes:
          - ${CONFIGDIR}/DemoApp/index.html:/usr/share/nginx/html/index.html:ro
          - ${DOCKER_BINARY}:/usr/local/bin/docker
          - /var/run/docker.sock:/var/run/docker.sock

    # nginx integrates various containers and exposes required ports
    nginx:
        image: nginx:1.13-alpine
        extra_hosts:
          - "skyport.local:${SKYPORT_DOCKER_GATEWAY}"
        depends_on:
          - shock
          - shock-browser
          - adminer
          - auth-server
          - awe-server
          - awe-monitor
          - demo-app-api
          - demo-app-web
        ports:
          - ${NGINX_PORT}:80
        volumes:
          - ${CONFIGDIR}/nginx/skyport-demo.conf:/etc/nginx/conf.d/default.conf:ro
          - ${CONFIGDIR}/nginx/:/usr/share/nginx/html/
          - ${DOCSDIR}:/usr/share/nginx/html/docs/:ro
          - ${LOGDIR}/nginx/:/var/log/nginx/

    # a graphical front end for MySQL useful for debugging
    adminer:
        image: adminer
        extra_hosts:
          - "skyport.local:${SKYPORT_DOCKER_GATEWAY}"
        ports:
            - 8080:8080

    # mongoDB for the SHOCK service, provides metadata storage
    mongo:
        image: mongo:3.6
        ports:
          - 27017
        # uncomment the next two lines to make SHOCK mongo data persistent
        # volumes:
        #  - ${SHOCKDIR}/db:/data/db

   # the MySQL server is a component of the auth server
   #
    auth-mysql:
        image: mysql:5.7
        command: ['--explicit_defaults_for_timestamp', '--init-file', '/tmp/dbsetup.demo.mysql']
        environment:
            MYSQL_ROOT_PASSWORD: secret
            MYSQL_DATABASE: DemoAppUsers
            MYSQL_USER: authService
            MYSQL_PASSWORD: authServicePassword
        volumes:
          - auth-mysql:/var/lib/mysql
          - ${CONFIGDIR}/authServer/dbsetup.demo.mysql:/tmp/dbsetup.demo.mysql
          #- ${AUTHDB}:/var/lib/mysql

   # we use a volume (see below) to make data persistent between runs
   #      -

    # the mongo database stores the awe server information during the run
    #
    # mount a volume in the mongo server to make data persistent between runs
    awe-mongo:
        image: mongo:3.6
        ports:
          - 27017
        # to make the AWE jobs persistent between runs uncomment the lines below
        #volumes:
        #  - ${SHOCKDIR}/db:/data/db


volumes:
  auth-mysql: