From 2f853a904c904b00f8da8b09e65d5fa033dbae1a Mon Sep 17 00:00:00 2001 From: Nicholas Car Date: Fri, 29 Nov 2024 22:59:23 +1000 Subject: [PATCH] model, validator, vocab, documentor script, stub for loader --- docs/index.md | 29 +- docs/manifest.md | 127 ++++++ docs/ont.md | 11 + docs/subsystems/catprez.md | 110 ----- docs/subsystems/overview.md | 7 - docs/subsystems/spaceprez.md | 1 - docs/subsystems/vocprez.md | 1 - manifest/documentor.py | 120 ++++++ manifest/example01.ttl | 33 ++ manifest/example02.ttl | 25 ++ manifest/example03.ttl | 24 ++ manifest/loader.py | 12 + manifest/mrr.ttl | 86 ++++ manifest/validator.ttl | 126 ++++++ mkdocs.yml | 16 +- poetry.lock | 790 ++++++++++++++++++++++------------- pyproject.toml | 1 + 17 files changed, 1099 insertions(+), 420 deletions(-) create mode 100644 docs/manifest.md create mode 100644 docs/ont.md delete mode 100644 docs/subsystems/catprez.md delete mode 100644 docs/subsystems/overview.md delete mode 100644 docs/subsystems/spaceprez.md delete mode 100644 docs/subsystems/vocprez.md create mode 100644 manifest/documentor.py create mode 100644 manifest/example01.ttl create mode 100644 manifest/example02.ttl create mode 100644 manifest/example03.ttl create mode 100644 manifest/loader.py create mode 100644 manifest/mrr.ttl create mode 100644 manifest/validator.ttl diff --git a/docs/index.md b/docs/index.md index 077da10..4fba104 100644 --- a/docs/index.md +++ b/docs/index.md @@ -1,31 +1,32 @@ ![](assets/prez-logo.png) +This is the namespace web page for Prez. + ## What is Prez? -Prez is an open source web application that delivers "profiles of Knowledge Graph data". +Prez is an open source web application API that delivers "profiles of Knowledge Graph data". -Prez is used to publish: +Prez is most commonly used to publish: * lists of managed vocabularies -* highly configurable catalogues of digital resources +* catalogues of semantic resources * spatial reference datasets -While being open source, Prez is mostly maintained by [KurrawongAI](https://kurrawong.ai) who provide professional services to assist with its use. - -## How can I get Prez? +In addition to Prez the main API tool, there are a series of smaller tools - scripts - that can be used to prepare [Semantic Web](https://en.wikipedia.org/wiki/Semantic_web) for publication by Prez. These, and the Prez system use the Prez namespace, which is this web address: -You can run Prez yourself by understanding how it works (see below) and running all the parts. +* `https://prez.dev/` -Or you can contact [KurrawongAI](https://kurrawong.ai) who can assist you. +## How can I get Prez? -## How does Prez work? +While being open source, Prez is mostly maintained by [KurrawongAI](https://kurrawong.ai) who provide professional services to assist with its use, see the [Prez Docs](https://docs.kurrawong.ai/prez/Overview) -Prez is available for use as two components: +You can still run Prez, the API, and any other smaller Prez fools yourself by understanding how it works - see details via the link above. -* [Prez](https://github.com/rdflib/prez/) - an API that 'slices and dices' Knowledge Graph data source according to data structure definitions -* [Prez UI](https://github.com/RDFLib/prez-ui) - a web user interface that displays data from the Prez API +If ou need help, you can [contact KurrawongAI](https://kurrawong.ai/contact) who can assist you. -These components require a Knowledge Graph database to store the data Prez uses. +## Prez tools -Additionally, Prez relies on management of processes to load data into a Knowledge Graph database. These can be implemented in many ways, such s workflows within version control systems. +Other than the main Prez (API) itself, the Prez tools are: +* [Prez Ontology](ont.md) +* [Prez Manifest Model](manifest.md) diff --git a/docs/manifest.md b/docs/manifest.md new file mode 100644 index 0000000..68aba50 --- /dev/null +++ b/docs/manifest.md @@ -0,0 +1,127 @@ +# Prez Manifest Model + +A Prez Manifest is an RDF file that describes and links to a set of resources that can be loaded into an RDF database for Prez to provide access to. + +To support Manifest creation and use, the following tools are provides: + +1. [The model](#model) +2. [Manifest Resource Roles Vocabulary](#roles-vocabulary) +3. [Validator](#validator) +4. [Build Scripts](#build-scripts) +5. [Examples](#examples) + +## Model + +``` mermaid +graph LR + Manifest --1:1-N--> Resource; + Resource --1:1--> artifact; + Resource --1:1--> role; + Resource --1:0-1--> name; + Resource --1:0-1--> decription; +``` + +The Manifest Model is simply a Manifest class, `prez:Manifest`, which MUST have 1 or more Resource Descriptors, `prof:ResourceDescriptor` indicated by the `prof:hasResource` predicate. + +Each Resource Descriptor MUST have exactly one `prof:hasArtifact` predicate indicating an RDF literal resource (string) giving a file path or path pattern containing the resource information, relative to the manifest. + +Each Resource Descriptor MUST also have exactly one `prof:hasRole` predicate indicating a Concept from the _Manifest Resource Roles Vocabulary_. + +Each Resource Descriptor MAY have a `schema:name` and/r a `schema:description` predicate indicating literal resources naming and describing it. + + +## Manifest Resource Roles Vocabulary + +This roles vocabulary contains the allowed roles that a resource can play with respect to a Manifest. + +The IRI of this vocabulary is: + +* `https://prez.dev/ManifestResourceRoles` + * the vocab namespace is `https://prez.dev/ManifestResourceRoles/` + * recommended namespace prefix is `mrr` + +Human-readable form: + +| Concept IRI | Label | Definition | Parent | +|-------------------------------------------|-----------------------------------------|---------------------------------------------------------------------------------------------------------------------|--------------------------------| +| `mrr:ContainerData` | Container Data | Data for the container, usually a Catalogue, including the identity of it and each item fo content | - | +| `mrr:ContentData` | Content Data | Data for the content of the container | - | +| `mrr:ContainerAndContentModel` | Container & Content Model | The default model for the container and the content. Must be a set of SAHCL Shapes | - | +| `mrr:ContainerModel` | Container Model | The default model for the container. Must be a set of SAHCL Shapes | `mrr:containerAndContentModel` | +| `mrr:ContentModel` | Content Model | The default model for the content. Must be a set of SAHCL Shapes | `mrr:containerAndContentModel` | +| `mrr:CompleteContainerAndContentLabels` | Complete Content and Container Labels | All the labels - possibly indluding names, descriptions & seeAlso links - for the Container and Content objects | - | +| `mrr:IncompleteContainerAndContentLabels` | Incomplete Content and Container Labels | Some of the labels - possibly indluding names, descriptions & seeAlso links - for the Container and Content objects | - | + +Machine-readable form: + +``` +--8<-- "manifest/mrr.ttl" +``` + +--8<-- "mrr.ttl" + +The IRI for automatic retrieval of this vocabulary file is: . + + +## Validator + +This simple [SHACL](https://www.w3.org/TR/shacl/) validator "Shapes" file can be used by SHACL validation software to test the validity of a Manifest RDF file with respect to this model: + +``` +--8<-- "manifest/validator.ttl" +``` + +The IRI for automatic retrieval of this Shapes file is: . + +The recommended tools to perform validation using this Shapes file are: + +1. [KurrawongAI's Online Validator](https://tools.dev.kurrawong.ai/validate) - this Shapes file is pre-loaded +2. [pySHACL Python tool](https://pypi.org/project/pyshacl/) - for scripted validation + +## Build Scripts + +### Documentor + +The `documentor.py` Python script in this documentation's repository creates a "Prez Resources" table in either Markdown or ASCIIDOC from a Manifest file which it validates first: + +* + +``` +usage: documentor.py [-h] [-v] [-t {markdown,asciidoc}] input + +positional arguments: + input File, Folder or Sparql Endpoint to read RDF from + +options: + -h, --help show this help message and exit + -v, --version show program's version number and exit + -t {markdown,asciidoc}, --type {markdown,asciidoc} + The type of markup you want to export: Markdown or ASCCIDOC +``` + +### Loader + +==_In Progress_== + +The `loader.py` Python script in this documentation's repository creates a + +* + +## Examples + +See the simple and always up-to-date [KurrawongAI Demo Vocabularies manifest](https://github.com/Kurrawong/demo-vocabs/manifest.ttl): + +Full: +``` +--8<-- "manifest/example01.ttl" +``` + +Partial: +``` +--8<-- "manifest/example02.ttl" +``` + +Invalid (second Resource Descriptor does not indicate a role) +``` +--8<-- "manifest/example03.ttl" +``` \ No newline at end of file diff --git a/docs/ont.md b/docs/ont.md new file mode 100644 index 0000000..1f0d8e1 --- /dev/null +++ b/docs/ont.md @@ -0,0 +1,11 @@ +# Prez Ontology + +Here be the ont! + + +Resource | Role | Description +--- | --- | --- +Catalogue Definition, [`catalogue.ttl`](catalogue.ttl) | [Container Data](https://prez.dev/ManifestResourceRoles/containerData) | The definition of, and medata for, the container which here is a dcat:Catalog object +Content, [`vocabs/*.ttl`](vocabs/*.ttl) | [Content Data](https://prez.dev/ManifestResourceRoles/contentData) | skos:ConceptsScheme objects in RDF (Turtle) files in the vocabs/ folder +[`ogc_records_profile.ttl`](https://github.com/RDFLib/prez/blob/main/prez/reference_data/profiles/ogc_records_profile.ttl) | [Container & Content Model](https://prez.dev/ManifestResourceRoles/containerAndContentModel) | + diff --git a/docs/subsystems/catprez.md b/docs/subsystems/catprez.md deleted file mode 100644 index 5b022ae..0000000 --- a/docs/subsystems/catprez.md +++ /dev/null @@ -1,110 +0,0 @@ -_The [Prez](https://prez.dev) subsystem for cataloguing._ - -## What does CatPrez do? - -CatPrez presents a [DCAT](https://www.w3.org/TR/vocab-dcat/) catalogue view of registered resources described using metadata. The resources can be any type of thing. Common types delivered by CatPrez are: - -* **datasets** - digital data objects -* **documents** - important documents of various types -* **standards** - data and other standards with special relations to other standards -* **organisations** - listed with organisations metadata -* **projects** - with all the temporal and output information - -...but you could have a catalogue of pets, boreholes, galactic clusters, whatever you like! - -## What does it look like? - -CatPrez presents several ways to access the content it contains: - -A search page: - -
-![](/assets/catprez-search.png) -
- -A sortable & filterable listing: - -
-![](/assets/catprez-listing.png) -
- -Direct access to each object: - -
-![](/assets/catprez-direct.png) -
- -A specialised [OGC Records API](https://ogcapi.ogc.org/records/) technical interface: - -
-![](/assets/catprez-ogcapi.png) -
- -A general-purpose [SPARQL](https://www.w3.org/TR/sparql11-protocol/) AP: - -
-![](/assets/catprez-sparql.png) -
- -## What makes it special? - -### Flexible data model - -CatPrez uses a [Knowlege Graph](https://en.wikipedia.org/wiki/Knowledge_graph) to store its information. This means it can store anything you can define, so if you want special metadata not normally captured, you can! - -The base data model CatPrez uses is [DCAT](https://www.w3.org/TR/vocab-dcat/) which contains basic cataloging properties like: - -* title -* created data -* indications of who has a relationship to the resource, like creator, publisher -* relationships to other resources - -and so on. CatPrez can have any extension to this you like. Perhaps, in your catalogue of pets, you want to record a cuteness score alongside pet name, no problem: just define what you mean by "pet score" and you can. - -### Flexible display - -The display of catalogued resources information will automatically reveal common and special properties you record, using a default display logic. So whatever you put in will come back out again. - -Here is CatPrez displaying common geometry and custom additional type properties for a resource: - -
-![](/assets/catprez-properties.png) -
- -You can extend on this with customisable widgets, for example, for scores/metrics for resources. Here is CatPrez showing a [FAIR score](https://data.org/resources/the-fair-data-principles/) for a dataset: - -
-![](/assets/catprez-fair.png) -
- -### Multiple catalogues - -Sometimes it's helpful to have very distinct whole catalogues. CatPrez handles this with... a catalogue of catalogues! You can have any number of distinct collections and resources can appear in one ore more of them. - -### Integrations - -CatPrez is part of the larger Prez system and shares its data storage with the other parts. This means CatPrez resources can link to vocabularies and spatial data, as well as other resources, and CatPrez can deliver all the parts seamlessly. - -You may want to categorise resources according to one or more vocabularies/controlled term lists and manage those term lists in [VocPrez](vocprez.md). - -You may also want to indicate the location of your resources using managed spatial objects in [SpacePrez](spaceprez.md). - -## Compared to other catalogue tools - -CatPrez _looks_ like common catalogue tools, such as [CKAN](https://ckan.org/) or [GeoNetwork](https://www.geonetwork-opensource.org/) but it's quite different under the hood and thus functions differently. Here are some comparison points: - -Aspect | CKAN | GeoNetwork | CatPrez | Notes ---- | --- | --- | --- | --- -**Data Model** | CKAN version of DCAT | ISO19115 or others you define | DCAT-based, extensible model | CKAN uses its own, DCAT-like, model and can be made to deliver other standard models, like ISO19115 _with a lot of effort_! Usually this involves exporting to other applications. GeoNetwork can only really deliver XML data according to ISO19115 schema or others you define in XSLT/schematron files - hard to do. CatPrez can map to any data model you wish to collect data for, with DCAT as a starting point, and can export a wide array of formats like RDF, JSON or XML. You can also pretty easily create new export formats: perhaps you need simple CSV? -**Data Storage** | Postgres database, accessed via an object-relational mapping | XML document DB | Knowledge Graph | CatPrez' DB is more flexible than CKAN's but far more performant and maintainable than GeoNetwork's. The former needs new schema additions for new metadata, the latter needs special indexing across documents (defined schemas) to make properties available -**UI** | Python API with python templating | Java API & templating | Separate Python API & Vue.js UI | CatPrez uses a newer API system than CKAN and completely separates concerns. This allows UI designers to work on UI without needing to know much about the back-end API -**Tech Stack** | Python - multiple, older, Python API tools (Pyramid, Flask), PostgresDB | Java, relational DB (Postgres, Oracle etc.) | Python (FastAPI newer API tool), RDF Knowledge Graph DB (any one of many) | CatPrez's stack is similar to CKAN's but the application code is mode modern. - - -## How does it work under the hood? - -CatPrez uses a [Knowlege Graph](https://en.wikipedia.org/wiki/Knowledge_graph) created with [RDF](https://en.wikipedia.org/wiki/Resource_Description_Framework) to store all of its content _and_ its configuration. This means that, while it has an expected minimum data model for catalogued items, it can grow when extended information is added with little effort. - -Since its configuration data is also stored in the same database, you have full control over how it delivers that data to users and can alter almost anything, just by changing data, not writing software. - -CatPrez data can be exported in standardised RDF form and all of it can also be queried via a [SPARQL](https://www.w3.org/TR/sparql11-query/) API. The User Interface itself uses the SPARQL API, so there are no hidden details needed for access and presentation of data. \ No newline at end of file diff --git a/docs/subsystems/overview.md b/docs/subsystems/overview.md deleted file mode 100644 index 6d45363..0000000 --- a/docs/subsystems/overview.md +++ /dev/null @@ -1,7 +0,0 @@ -Prez presents Knowledge Graph data in multiple ways so that it can be used for multiple purposes. - -The 3 main perspectives Prez offers are: - -* **cataloging** - the [CatPrez](catprez.md) subsystem presents a configurable [DCAT](https://www.w3.org/TR/vocab-dcat/) catalogue view of registered resources -* **spatial** - the [SpacePrez](spaceprez.md) subsystem presents a map portal into spatial data, from whole-dataset right down to individual spatial element -* **vocab** - the [VocPrez](vocprez.md) subsystem presents a specialised interface and APIs for the delivery of controlled term lists diff --git a/docs/subsystems/spaceprez.md b/docs/subsystems/spaceprez.md deleted file mode 100644 index 302b405..0000000 --- a/docs/subsystems/spaceprez.md +++ /dev/null @@ -1 +0,0 @@ -The [Prez](https://prez.dev) subsystem for spatial data. \ No newline at end of file diff --git a/docs/subsystems/vocprez.md b/docs/subsystems/vocprez.md deleted file mode 100644 index 9d88ff7..0000000 --- a/docs/subsystems/vocprez.md +++ /dev/null @@ -1 +0,0 @@ -The [Prez](https://prez.dev) subsystem for vocabularies. \ No newline at end of file diff --git a/manifest/documentor.py b/manifest/documentor.py new file mode 100644 index 0000000..1644fc9 --- /dev/null +++ b/manifest/documentor.py @@ -0,0 +1,120 @@ +""" +This script creates a "Prez Resources" table in either Markdown or ASCIIDOC from a Manifest file which it validates first + +Run this script with the -h flag for more help, i.e. ~$ python documentor.py -h +""" + +import argparse +from pyshacl import validate +from urllib.parse import ParseResult, urlparse +from pathlib import Path +import sys +from rdflib import Graph +from rdflib import PROF, SDO, SKOS + +__version__ = "1.0.0" + + +def create_table(g: Graph, t="markdown") -> str: + if t == "asciidoc": + header = "|===\n| Resource | Role | Description\n\n" + else: + header = "Resource | Role | Description\n--- | --- | ---\n" + + body = "" + for s, o in g.subject_objects(PROF.hasResource): + a = str(g.value(o, PROF.hasArtifact)) + if t == "asciidoc": + artifact = f'link:{a}[`{a.split("/")[-1] if a.startswith("http") else a}`]' + else: + artifact = f'[`{a.split("/")[-1] if a.startswith("http") else a}`]({a})' + role_iri = g.value(o, PROF.hasRole) + role_label = g.value(role_iri, SKOS.prefLabel) + if t == "asciidoc": + role = f"{role_iri}[{role_label}]" + else: + role = f"[{role_label}]({role_iri})" + name = g.value(o, SDO.name) + description = g.value(o, SDO.description) + n = f"{name}, {artifact}" if name is not None else f"{artifact}" + d = description if description is not None else "" + if t == "asciidoc": + body += f"| {n} | {role} | {d}\n" + else: + body += f"{n} | {role} | {d}\n" + + if t == "asciidoc": + footer = "|===\n" + else: + footer = "" + + return header + body + footer + + +def setup_cli_parser(args=None): + def url_file_or_folder(input: str) -> ParseResult | Path: + parsed = urlparse(input) + if all([parsed.scheme, parsed.netloc]): + return parsed + path = Path(input) + if path.is_file(): + return path + if path.is_dir(): + return path + raise argparse.ArgumentTypeError( + f"{input} is not a valid input. Must be a file, folder or sparql endpoint" + ) + + parser = argparse.ArgumentParser() + + parser.add_argument( + "-v", + "--version", + action="version", + version="{version}".format(version=__version__), + ) + + parser.add_argument( + "-t", + "--type", + help="The type of markup you want to export: Markdown or ASCCIDOC", + choices=["markdown", "asciidoc"], + default="markdown", + ) + + parser.add_argument( + "input", + help="File, Folder or Sparql Endpoint to read RDF from", + type=url_file_or_folder, + ) + + return parser.parse_args(args) + + +def cli(args=None): + if args is None: + args = sys.argv[1:] + + args = setup_cli_parser(args) + + # parse the target file + g = Graph().parse(args.input) + + # add in the Roles vocab + g.parse(Path(__file__).parent / "mrr.ttl") + + # validate it before proceeding + valid, validation_graph, validation_text = validate(g, shacl_graph=str(Path(__file__).parent / "manifest-validator.ttl")) + if not valid: + txt = "Your Manifest is not valid:" + txt += "\n\n" + txt += validation_text + raise ValueError(txt) + + print(create_table(g, t=args.type)) + + +if __name__ == "__main__": + retval = cli(sys.argv[1:]) + if retval is not None: + sys.exit(retval) \ No newline at end of file diff --git a/manifest/example01.ttl b/manifest/example01.ttl new file mode 100644 index 0000000..38c1466 --- /dev/null +++ b/manifest/example01.ttl @@ -0,0 +1,33 @@ +PREFIX mrr: +PREFIX prezont: +PREFIX prof: +PREFIX schema: + +[] + a prezont:Manifest ; + prof:hasResource + [ + prof:hasArtifact "catalogue.ttl" ; + prof:hasRole mrr:ContainerData ; + schema:description "The definition of, and medata for, the container which here is a dcat:Catalog object" ; + schema:name "Catalogue Definition" + ] , + [ + prof:hasArtifact "vocabs/*.ttl" ; + prof:hasRole mrr:ContentData ; + schema:description "skos:ConceptsScheme objects in RDF (Turtle) files in the vocabs/ folder" ; + schema:name "Content" + ] , + [ + prof:hasArtifact "https://github.com/RDFLib/prez/blob/main/prez/reference_data/profiles/ogc_records_profile.ttl" ; + prof:hasRole mrr:ContainerAndContentModel ; + schema:description "The default Prez profile for Records API" ; + schema:name "Profile Definition" + ] , + [ + prof:hasArtifact "_background/labels.ttl" ; + prof:hasRole mrr:CompleteContainerAndContentLabels ; + schema:description "An RDF file containing all the labels for the container content" ; + schema:name "Labels file" + ] ; +. \ No newline at end of file diff --git a/manifest/example02.ttl b/manifest/example02.ttl new file mode 100644 index 0000000..0aaa6c4 --- /dev/null +++ b/manifest/example02.ttl @@ -0,0 +1,25 @@ +PREFIX mrr: +PREFIX prezont: +PREFIX prof: +PREFIX schema: + +[] + a prezont:Manifest ; + prof:hasResource + [ + prof:hasArtifact "catalogue.ttl" ; + prof:hasRole mrr:ContainerData ; + schema:description "The definition of, and medata for, the container which here is a dcat:Catalog object" ; + schema:name "Catalogue Definition" + ] , + [ + prof:hasArtifact "vocabs/*.ttl" ; + prof:hasRole mrr:ContentData ; + schema:description "skos:ConceptsScheme objects in RDF (Turtle) files in the vocabs/ folder" ; + schema:name "Content" + ] , + [ + prof:hasArtifact "https://github.com/RDFLib/prez/blob/main/prez/reference_data/profiles/ogc_records_profile.ttl" ; + prof:hasRole mrr:ContainerAndContentModel ; + ] ; +. \ No newline at end of file diff --git a/manifest/example03.ttl b/manifest/example03.ttl new file mode 100644 index 0000000..ce8b8ee --- /dev/null +++ b/manifest/example03.ttl @@ -0,0 +1,24 @@ +PREFIX mrr: +PREFIX prezont: +PREFIX prof: +PREFIX schema: + +[] + a prezont:Manifest ; + prof:hasResource + [ + prof:hasArtifact "catalogue.ttl" ; + prof:hasRole mrr:ContainerData ; + schema:description "The definition of, and medata for, the container which here is a dcat:Catalog object" ; + schema:name "Catalogue Definition" + ] , + [ + prof:hasArtifact "vocabs/*.ttl" ; + schema:description "skos:ConceptsScheme objects in RDF (Turtle) files in the vocabs/ folder" ; + schema:name "Content" + ] , + [ + prof:hasArtifact "https://github.com/RDFLib/prez/blob/main/prez/reference_data/profiles/ogc_records_profile.ttl" ; + prof:hasRole mrr:ContainerAndContentModel ; + ] ; +. \ No newline at end of file diff --git a/manifest/loader.py b/manifest/loader.py new file mode 100644 index 0000000..7476ef2 --- /dev/null +++ b/manifest/loader.py @@ -0,0 +1,12 @@ +""" +This script creates an n-quads files containing the following by parsing a Prez Manifest: + + 1. A Named Graph for each content item using the item's IRI as the graph IRI + 2. A Named Graph for the container either using the container's IRI as the graph IRI if given, or by making one up if a Blank Node + 3. All the triples in resources with roles mrr:completeContainerAndContentLabels & mrr:incompleteContainerAndContentLabels within a Named Graph with IRI + 4. An Olis Virtual Graph, object which is as an alias for all the Named Graphs from 1., 2. & 3. + 5. Entries in the System Graph - Named Graph with IRI - for each Real and the Virtual Graph + +Run this script with the -h flag for more help, i.e. ~$ python documentor.py -h +""" + diff --git a/manifest/mrr.ttl b/manifest/mrr.ttl new file mode 100644 index 0000000..48c4e7f --- /dev/null +++ b/manifest/mrr.ttl @@ -0,0 +1,86 @@ +PREFIX cs: +PREFIX mrr: +PREFIX owl: +PREFIX rdfs: +PREFIX schema: +PREFIX skos: +PREFIX xsd: + +mrr:contentModel + a skos:Concept ; + skos:definition "The default model for the content. Must be a set of SAHCL Shapes" ; + skos:inScheme cs: ; + skos:prefLabel "Content Model" ; +. + +mrr:CompleteContainerAndContentLabels + a skos:Concept ; + skos:definition "All the labels - possibly indluding names, descriptions & seeAlso links - for the Container and Content objects" ; + skos:inScheme cs: ; + skos:prefLabel "Complete Content and Container Labels" ; +. + +mrr:ContainerAndContentModel + a skos:Concept ; + skos:definition "The default model for the container and the content. Must be a set of SAHCL Shapes" ; + skos:inScheme cs: ; + skos:prefLabel "Container & Content Model" ; +. + +mrr:ContainerData + a skos:Concept ; + skos:definition "Data for the container, usually a Catalogue, including the identity of it and each item fo content" ; + skos:inScheme cs: ; + skos:prefLabel "Container Data" ; +. + +mrr:ContainerModel + a skos:Concept ; + skos:definition "The default model for the container. Must be a set of SAHCL Shapes" ; + skos:inScheme cs: ; + skos:prefLabel "Container Model" ; +. + +mrr:ContentData + a skos:Concept ; + skos:definition "Data for the content of the container" ; + skos:inScheme cs: ; + skos:prefLabel "Content Data" ; +. + +mrr:IncompleteContainerAndContentLabels + a skos:Concept ; + skos:definition "Some of the labels - possibly indluding names, descriptions & seeAlso links - for the Container and Content objects" ; + skos:inScheme cs: ; + skos:prefLabel "Incomplete Content and Container Labels" ; +. + + + a schema:Organization ; + schema:name "KurrawongAI" ; + schema:url "https://kurrawong.ai"^^xsd:anyURI ; +. + +mrr:1.0.0 + rdfs:label "1.0.0" ; +. + +cs: + a skos:ConceptScheme ; + owl:versionIRI mrr:1.0.0 ; + owl:versionInfo "1.0.0: First public version" ; + skos:definition "This vocabulary is a test vocabulary showing the use of images within Concept definitions"@en ; + skos:hasTopConcept + mrr:completeContainerAndContentLabels , + mrr:containerAndContentModel , + mrr:containerData , + mrr:containerModel , + mrr:contentData , + mrr:incompleteContainerAndContentLabels ; + skos:historyNote "Create in 2024 for Prez data loading" ; + skos:prefLabel "Manifest Resource Roles Vocabulary" ; + schema:creator ; + schema:dateCreated "2024-11-29"^^xsd:date ; + schema:dateModified "2024-11-29"^^xsd:date ; + schema:publisher ; +. \ No newline at end of file diff --git a/manifest/validator.ttl b/manifest/validator.ttl new file mode 100644 index 0000000..1afb2d2 --- /dev/null +++ b/manifest/validator.ttl @@ -0,0 +1,126 @@ +PREFIX owl: +PREFIX prezont: +PREFIX prof: +PREFIX rdf: +PREFIX schema: +PREFIX sh: +PREFIX skos: +PREFIX val: +PREFIX xsd: + + + a owl:Ontology ; + owl:versionIRI val:1.0.0 ; + owl:versionInfo "1.0.0: First public version" ; + schema:creator ; + schema:dateCreated "2024-11-29"^^xsd:date ; + schema:dateModified "2024-11-29"^^xsd:date ; + schema:definition "The SHACL Shapes Validator for the Prez Ontology Manifest Model"@en ; + schema:name "Prez Manifest Validator" ; + schema:publisher ; +. + +val:ShapeN01 + a sh:NodeShape ; + sh:property val:ShapeP01 ; + sh:targetClass prezont:Manifest ; +. + +val:ShapeN02 + a sh:NodeShape ; + sh:property + val:ShapeP02 , + val:ShapeP03 , + val:ShapeP04 , + val:ShapeP05 ; + sh:targetObjectsOf prof:hasResource ; +. + +val:ShapeP01 + a sh:PropertyShape ; + sh:nodeKind sh:BlankNodeOrIRI ; + sh:message "ShapeP01: You must supply at least one value for prof:hasResource for a prezont:Manifest and it must be either a Blank Node or an IRI" ; + sh:minCount 1 ; + sh:path prof:hasResource ; +. + +val:ShapeP02 + a sh:PropertyShape ; + sh:maxCount 1 ; + sh:message "ShapeP02: You must supply exactly one value for prof:hasArtifact for a prezont:Manifest's Resource Descriptors and it must be a string that can be interpreted as a file path, either relative to the manifest file, or an absolute system path or a URL" ; + sh:minCount 1 ; + sh:nodeKind sh:Literal ; + sh:path prof:hasArtifact ; +. + +val:ShapeP03 + a sh:PropertyShape ; + sh:maxCount 1 ; + sh:message "ShapeP03: You must supply exactly one value for prof:hasRole for a prezont:Manifest's Resource Descriptors with the value selected from the Prez Manifest Resource Roles Vocabulary" ; + sh:minCount 1 ; + sh:nodeKind sh:IRI ; + sh:path prof:hasRole ; +. + +val:ShapeP04 + a sh:PropertyShape ; + sh:maxCount 1 ; + sh:message "ShapeP04: If you supply a schema:description for a prezont:Manifest's Resource Descriptors, it must be either a plain string or a langString literal" ; + sh:or ( + + [ + sh:datatype xsd:string ; + ] + + [ + sh:datatype rdf:langString ; + ] + ) ; + sh:path schema:description ; +. + +val:ShapeP05 + a sh:PropertyShape ; + sh:maxCount 1 ; + sh:message "ShapeP05: If you supply a schema:name for a prezont:Manifest's Resource Descriptors, it must be either a plain string or a langString literal" ; + sh:or ( + + [ + sh:datatype xsd:string ; + ] + + [ + sh:datatype rdf:langString ; + ] + ) ; + sh:path schema:name ; +. + +val:ShapeN03 + a sh:NodeShape ; + sh:targetObjectsOf prof:hasRole ; + sh:property [ + a sh:PropertyShape ; + sh:minCount 1 ; + sh:maxCount 1 ; + sh:path skos:inScheme ; + ] ; +. + +val:1.0.0 + schema:name "1.0.0" ; +. + + + a schema:Person ; + schema:email "nick@kurrawong.ai"^^xsd:anyURI ; + schema:identifier "https://orcid.org/0000-0002-8742-7730"^^xsd:anyURI ; + schema:memberOf ; + schema:name "Nicholas J. Car" ; +. + + + a schema:Organization ; + schema:name "KurrawongAI" ; + schema:url "https://kurrawong.ai"^^xsd:anyURI ; +. diff --git a/mkdocs.yml b/mkdocs.yml index e618336..c9e0a30 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -13,10 +13,16 @@ extra_css: markdown_extensions: - admonition - md_in_html + - pymdownx.snippets + - pymdownx.superfences: + custom_fences: + - name: mermaid + class: mermaid + format: !!python/name:pymdownx.superfences.fence_code_format + - pymdownx.caret + - pymdownx.mark + - pymdownx.tilde nav: - 'index.md' - - 'Subsystems': - - 'Overview': 'subsystems/overview.md' - - 'CatPrez': 'subsystems/catprez.md' - - 'SpacePrez': 'subsystems/spaceprez.md' - - 'VocPrez': 'subsystems/vocprez.md' + - 'ont.md' + - 'manifest.md' diff --git a/poetry.lock b/poetry.lock index 7f0bc4d..1f11232 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,6 +1,6 @@ [[package]] name = "certifi" -version = "2023.7.22" +version = "2024.8.30" description = "Python package for providing Mozilla's CA Bundle." category = "main" optional = false @@ -8,7 +8,7 @@ python-versions = ">=3.6" [[package]] name = "charset-normalizer" -version = "3.2.0" +version = "3.4.0" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." category = "main" optional = false @@ -47,17 +47,48 @@ python-dateutil = ">=2.8.1" [package.extras] dev = ["flake8", "markdown", "twine", "wheel"] +[[package]] +name = "html5rdf" +version = "1.2.1" +description = "HTML parser based on the WHATWG HTML specification" +category = "main" +optional = false +python-versions = ">=3.8" + [[package]] name = "idna" -version = "3.4" +version = "3.10" description = "Internationalized Domain Names in Applications (IDNA)" category = "main" optional = false -python-versions = ">=3.5" +python-versions = ">=3.6" + +[package.extras] +all = ["flake8 (>=7.1.1)", "mypy (>=1.11.2)", "pytest (>=8.3.2)", "ruff (>=0.6.2)"] + +[[package]] +name = "importlib-metadata" +version = "8.5.0" +description = "Read metadata from Python packages" +category = "main" +optional = false +python-versions = ">=3.8" + +[package.dependencies] +zipp = ">=3.20" + +[package.extras] +check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1)"] +cover = ["pytest-cov"] +doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] +enabler = ["pytest-enabler (>=2.2)"] +perf = ["ipython"] +test = ["flufl.flake8", "importlib-resources (>=1.3)", "jaraco.test (>=5.4)", "packaging", "pyfakefs", "pytest (>=6,!=8.1.*)", "pytest-perf (>=0.9.2)"] +type = ["pytest-mypy"] [[package]] name = "jinja2" -version = "3.1.2" +version = "3.1.4" description = "A very fast and expressive template engine." category = "main" optional = false @@ -71,23 +102,23 @@ i18n = ["Babel (>=2.7)"] [[package]] name = "markdown" -version = "3.4.4" +version = "3.7" description = "Python implementation of John Gruber's Markdown." category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [package.extras] -docs = ["mdx-gh-links (>=0.2)", "mkdocs (>=1.0)", "mkdocs-nature (>=0.4)"] +docs = ["mdx-gh-links (>=0.2)", "mkdocs (>=1.5)", "mkdocs-gen-files", "mkdocs-literate-nav", "mkdocs-nature (>=0.6)", "mkdocs-section-index", "mkdocstrings[python]"] testing = ["coverage", "pyyaml"] [[package]] name = "markupsafe" -version = "2.1.3" +version = "3.0.2" description = "Safely add untrusted strings to HTML/XML markup." category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.9" [[package]] name = "mergedeep" @@ -99,30 +130,43 @@ python-versions = ">=3.6" [[package]] name = "mkdocs" -version = "1.5.2" +version = "1.6.1" description = "Project documentation with Markdown." category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [package.dependencies] click = ">=7.0" colorama = {version = ">=0.4", markers = "platform_system == \"Windows\""} ghp-import = ">=1.0" jinja2 = ">=2.11.1" -markdown = ">=3.2.1" +markdown = ">=3.3.6" markupsafe = ">=2.0.1" mergedeep = ">=1.3.4" +mkdocs-get-deps = ">=0.2.0" packaging = ">=20.5" pathspec = ">=0.11.1" -platformdirs = ">=2.2.0" pyyaml = ">=5.1" pyyaml-env-tag = ">=0.1" watchdog = ">=2.0" [package.extras] i18n = ["babel (>=2.9.0)"] -min-versions = ["babel (==2.9.0)", "click (==7.0)", "colorama (==0.4)", "ghp-import (==1.0)", "importlib-metadata (==4.3)", "jinja2 (==2.11.1)", "markdown (==3.2.1)", "markupsafe (==2.0.1)", "mergedeep (==1.3.4)", "packaging (==20.5)", "pathspec (==0.11.1)", "platformdirs (==2.2.0)", "pyyaml (==5.1)", "pyyaml-env-tag (==0.1)", "typing-extensions (==3.10)", "watchdog (==2.0)"] +min-versions = ["babel (==2.9.0)", "click (==7.0)", "colorama (==0.4)", "ghp-import (==1.0)", "importlib-metadata (==4.4)", "jinja2 (==2.11.1)", "markdown (==3.3.6)", "markupsafe (==2.0.1)", "mergedeep (==1.3.4)", "mkdocs-get-deps (==0.2.0)", "packaging (==20.5)", "pathspec (==0.11.1)", "pyyaml (==5.1)", "pyyaml-env-tag (==0.1)", "watchdog (==2.0)"] + +[[package]] +name = "mkdocs-get-deps" +version = "0.2.0" +description = "MkDocs extension that lists all dependencies according to a mkdocs.yml file" +category = "main" +optional = false +python-versions = ">=3.8" + +[package.dependencies] +mergedeep = ">=1.3.4" +platformdirs = ">=2.2.0" +pyyaml = ">=5.1" [[package]] name = "mkdocs-material" @@ -143,69 +187,131 @@ requests = ">=2.26" [[package]] name = "mkdocs-material-extensions" -version = "1.1.1" +version = "1.3.1" description = "Extension pack for Python Markdown and MkDocs Material." category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" + +[[package]] +name = "owlrl" +version = "7.1.2" +description = "A simple implementation of the OWL2 RL Profile, as well as a basic RDFS inference, on top of RDFLib. Based mechanical forward chaining." +category = "main" +optional = false +python-versions = "<4.0,>=3.8" + +[package.dependencies] +rdflib = ">=7.1.1" [[package]] name = "packaging" -version = "23.1" +version = "24.2" description = "Core utilities for Python packages" category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [[package]] name = "pathspec" -version = "0.11.2" +version = "0.12.1" description = "Utility library for gitignore style pattern matching of file paths." category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [[package]] name = "platformdirs" -version = "3.10.0" -description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." +version = "4.3.6" +description = "A small Python package for determining appropriate platform-specific dirs, e.g. a `user data dir`." category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" + +[package.extras] +docs = ["furo (>=2024.8.6)", "proselint (>=0.14)", "sphinx (>=8.0.2)", "sphinx-autodoc-typehints (>=2.4)"] +test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=8.3.2)", "pytest-cov (>=5)", "pytest-mock (>=3.14)"] +type = ["mypy (>=1.11.2)"] + +[[package]] +name = "prettytable" +version = "3.12.0" +description = "A simple Python library for easily displaying tabular data in a visually appealing ASCII table format" +category = "main" +optional = false +python-versions = ">=3.9" + +[package.dependencies] +wcwidth = "*" [package.extras] -docs = ["furo (>=2023.7.26)", "proselint (>=0.13)", "sphinx (>=7.1.1)", "sphinx-autodoc-typehints (>=1.24)"] -test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=7.4)", "pytest-cov (>=4.1)", "pytest-mock (>=3.11.1)"] +tests = ["pytest", "pytest-cov", "pytest-lazy-fixtures"] [[package]] name = "pygments" -version = "2.16.1" +version = "2.18.0" description = "Pygments is a syntax highlighting package written in Python." category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [package.extras] -plugins = ["importlib-metadata"] +windows-terminal = ["colorama (>=0.4.6)"] [[package]] name = "pymdown-extensions" -version = "10.3" +version = "10.12" description = "Extension pack for Python Markdown." category = "main" optional = false python-versions = ">=3.8" [package.dependencies] -markdown = ">=3.2" +markdown = ">=3.6" pyyaml = "*" [package.extras] extra = ["pygments (>=2.12)"] +[[package]] +name = "pyparsing" +version = "3.2.0" +description = "pyparsing module - Classes and methods to define and execute parsing grammars" +category = "main" +optional = false +python-versions = ">=3.9" + +[package.extras] +diagrams = ["jinja2", "railroad-diagrams"] + +[[package]] +name = "pyshacl" +version = "0.29.0" +description = "Python SHACL Validator" +category = "main" +optional = false +python-versions = "<4,>=3.9" + +[package.dependencies] +importlib-metadata = {version = ">6", markers = "python_version < \"3.12\""} +owlrl = ">=7.1.2,<8" +packaging = ">=21.3" +prettytable = [ + {version = ">=3.5.0", markers = "python_version >= \"3.8\" and python_version < \"3.12\""}, + {version = ">=3.7.0", markers = "python_version >= \"3.12\""}, +] +rdflib = {version = ">=7.1.1,<8.0", extras = ["html"]} + +[package.extras] +dev-coverage = ["coverage (>6.1,!=6.1.1,<7)", "platformdirs", "pytest-cov (>=2.8.1,<3.0.0)"] +dev-lint = ["black (==24.3.0)", "platformdirs", "ruff (>=0.1.5,<0.2.0)"] +dev-type-checking = ["mypy (>=1.13.0)", "platformdirs", "types-setuptools"] +http = ["sanic (>=22.12,<23)", "sanic-cors (==2.2.0)", "sanic-ext (>=23.3,<23.6)"] +js = ["pyduktape2 (>=0.4.6,<0.5.0)"] + [[package]] name = "python-dateutil" -version = "2.8.2" +version = "2.9.0.post0" description = "Extensions to the standard Python datetime module" category = "main" optional = false @@ -216,11 +322,11 @@ six = ">=1.5" [[package]] name = "pyyaml" -version = "6.0.1" +version = "6.0.2" description = "YAML parser and emitter for Python" category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.8" [[package]] name = "pyyaml-env-tag" @@ -233,13 +339,32 @@ python-versions = ">=3.6" [package.dependencies] pyyaml = "*" +[[package]] +name = "rdflib" +version = "7.1.1" +description = "RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information." +category = "main" +optional = false +python-versions = "<4.0.0,>=3.8.1" + +[package.dependencies] +html5rdf = {version = ">=1.2,<2", optional = true, markers = "extra == \"html\""} +pyparsing = ">=2.1.0,<4" + +[package.extras] +berkeleydb = ["berkeleydb (>=18.1.0,<19.0.0)"] +html = ["html5rdf (>=1.2,<2)"] +lxml = ["lxml (>=4.3,<6.0)"] +networkx = ["networkx (>=2,<4)"] +orjson = ["orjson (>=3.9.14,<4)"] + [[package]] name = "requests" -version = "2.31.0" +version = "2.32.3" description = "Python HTTP for Humans." category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [package.dependencies] certifi = ">=2017.4.17" @@ -261,115 +386,169 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" [[package]] name = "urllib3" -version = "2.0.4" +version = "2.2.3" description = "HTTP library with thread-safe connection pooling, file post, and more." category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [package.extras] brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)"] -secure = ["certifi", "cryptography (>=1.9)", "idna (>=2.0.0)", "pyopenssl (>=17.1.0)", "urllib3-secure-extra"] +h2 = ["h2 (>=4,<5)"] socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"] zstd = ["zstandard (>=0.18.0)"] [[package]] name = "watchdog" -version = "3.0.0" +version = "6.0.0" description = "Filesystem events monitoring" category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.9" [package.extras] watchmedo = ["PyYAML (>=3.10)"] +[[package]] +name = "wcwidth" +version = "0.2.13" +description = "Measures the displayed width of unicode strings in a terminal" +category = "main" +optional = false +python-versions = "*" + +[[package]] +name = "zipp" +version = "3.21.0" +description = "Backport of pathlib-compatible object wrapper for zip files" +category = "main" +optional = false +python-versions = ">=3.9" + +[package.extras] +check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1)"] +cover = ["pytest-cov"] +doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] +enabler = ["pytest-enabler (>=2.2)"] +test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-ignore-flaky"] +type = ["pytest-mypy"] + [metadata] lock-version = "1.1" python-versions = "^3.11" -content-hash = "c92ca7878a56e7930acdef8192954765f5f8c12e47b0e313477a7a5bdec0e834" +content-hash = 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