Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Plot secondary structure glyphs #23

Open
cmdcolin opened this issue Jul 6, 2021 · 0 comments
Open

Plot secondary structure glyphs #23

cmdcolin opened this issue Jul 6, 2021 · 0 comments

Comments

@cmdcolin
Copy link
Contributor

cmdcolin commented Jul 6, 2021

Jalview has a nice secondary structure view on plots

Screenshot from 2021-07-06 13-18-31

The lettering from the stockholm file can show the alphabet [HGIEBTSCX] which means "In SS the letters are taken from DSSP: H=alpha-helix, G=3/10-helix, I=p-helix, E=extended strand, B=residue in isolated b-bridge, T=turn, S=bend, C=coil/loop.)"

These are similar to aims in #2 but already embedded in stockholm files
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@cmdcolin