render-skeleton-rmd.yaml

# Workflow derived from https://rfortherestofus.com/2023/05/github-actions
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
  workflow_dispatch:
  pull_request:
    branches: [ master, main, develop ]

name: render-visc-empty-skeleton-rmd

jobs:
  render-visc-empty-skeleton-rmd:
    runs-on: ubuntu-latest
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
    
    steps:

      - name: Checkout VISCtemplates repo
        uses: actions/checkout@v4
    
      - name: Install pandoc
        uses: r-lib/actions/setup-pandoc@v2

      - name: Set up tinytex
        uses: r-lib/actions/setup-tinytex@v2
      
      - name: Set up R
        uses: r-lib/actions/setup-r@v2

      - name: Install R packages from VISCtemplates DESCRIPTION file and any others needed
        uses: r-lib/actions/setup-r-dependencies@v2
        with:
          packages: |
            any::remotes
            any::devtools
            any::conflicted
            any::tidyverse
      
      - name: Install VISCfunctions from GitHub
        run: |
          Rscript -e 'remotes::install_github("FredHutch/VISCfunctions")'

      - name: Install VISCtemplates
        run: |
         Rscript -e 'devtools::install()'

      - name: Render visc_empty and visc_report versions of skeleton.Rmd to all output formats
        run: |
          Rscript -e 'rmarkdown::render("inst/rmarkdown/templates/visc_empty/skeleton/skeleton.Rmd", output_format="all")'
          Rscript -e 'rmarkdown::render("inst/rmarkdown/templates/visc_report/skeleton/skeleton.Rmd", output_format="all")'

      - name: Upload visc_empty skeleton.docx and skeleton.pdf as GitHub action artifact
        uses: actions/upload-artifact@v4
        with:
          name: visc-empty-skeleton-pdf-and-docx
          path: |
            inst/rmarkdown/templates/visc_empty/skeleton/skeleton.pdf
            inst/rmarkdown/templates/visc_empty/skeleton/skeleton.docx

      - name: Upload visc_report skeleton.docx and skeleton.pdf as GitHub action artifact
        uses: actions/upload-artifact@v4
        with:
          name: visc-report-skeleton-pdf-and-docx
          path: |
            inst/rmarkdown/templates/visc_report/skeleton/skeleton.pdf
            inst/rmarkdown/templates/visc_report/skeleton/skeleton.docx