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A012_avg_acrs_animals_spectrogram_plots.m
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A012_avg_acrs_animals_spectrogram_plots.m
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%% load and save data from all anims
cd('D:\Gattas\ephys_data_final\group_plots\spectrogram_matrices_all_conds_per_animal')
trial_selection = 'run'
%%
animal = 1:5;
if strcmp('run',trial_selection)
cond_1_all_anim = zeros(size(cond1));
%cond_1_all_anim = zeros(size(mn_acrs_trials,1), size(mn_acrs_trials,2));
elseif strcmp('novel1',task)||strcmp('novel2',task)
cond_1_all_anim = zeros(size(cond1));
cond_2_all_anim = zeros(size(cond1));
e1_c2 = zeros(size(cond1,1), size(cond1,2), length(animal));
e2_c2 = zeros(size(cond1,1), size(cond1,2), length(animal));
e3_c2 = zeros(size(cond1,1), size(cond1,2), length(animal));
e4_c2 = zeros(size(cond1,1), size(cond1,2), length(animal));
else
if strcmp('yes',match)
load('anim1_AL_PM_inseq_outseq_exp_p_o_matched_trials.mat')
else
load(['anim1_AL_PM_inseq_outseq_exp_' lock '_nonmatched_trials_' task '.mat'])
end
cond_1_all_anim = zeros(size(cond1));
cond_2_all_anim = zeros(size(cond1));
e1_c2 = zeros(size(cond1,1), size(cond1,2), length(animal));
e2_c2 = zeros(size(cond1,1), size(cond1,2), length(animal));
e3_c2 = zeros(size(cond1,1), size(cond1,2), length(animal));
e4_c2 = zeros(size(cond1,1), size(cond1,2), length(animal));
end
e1_c1 = zeros(size(cond1,1), size(cond1,2), length(animal));
e2_c1 = zeros(size(cond1,1), size(cond1,2), length(animal));
e3_c1 = zeros(size(cond1,1), size(cond1,2), length(animal));
e4_c1 = zeros(size(cond1,1), size(cond1,2), length(animal));
% init 4 electrodes for each condition
for a = 1:length(animal)
if strcmp('run',trial_selection)
load(['anim' num2str(animal(a)) '_AL_PM_' trial_selection])
elseif strcmp('novel1',task)
load(['anim' num2str(animal(a)) '_AL_PM_' trial_selection '_' lock '_nonmatched_trials_' task])
elseif strcmp('novel2',task)
load(['anim' num2str(animal(a)) '_AL_PM_' trial_selection '_' lock '_nonmatched_trials_' task])
else
if strcmp('yes',match)
load(['anim' num2str(animal(a)) '_AL_PM_' trial_selection '_' lock '_matched_trials'])
else
load(['anim' num2str(animal(a)) '_AL_PM_' trial_selection '_' lock '_nonmatched_trials_' task '.mat'])
end
end
% cond 1
e1_c1(:,:,a) = cond1(:,:,1); %elec1cond1
e2_c1(:,:, a) = cond1(:,:,2);
e3_c1(:,:,a) = cond1(:,:,3);
e4_c1(:,:, a) = cond1(:,:,4);
if ~strcmp('run',trial_selection)
%cond 2
e1_c2(:,:, a) = cond2(:,:,1);
e2_c2(:,:, a) = cond2(:,:,2);
e3_c2(:,:, a) = cond2(:,:,3);
e4_c2(:,:, a) = cond2(:,:,4);
end
end
% avg acrs anims
cond_1_all_anim(:,:, 1) = nanmean(e1_c1,3);
cond_1_all_anim_std(:,:, 1) = nanstd(e1_c1,1,3);
cond_1_all_anim(:,:, 2) = nanmean(e2_c1,3);
cond_1_all_anim_std(:,:, 2) = nanstd(e2_c1,1,3);
cond_1_all_anim(:,:, 3) = nanmean(e3_c1,3);
cond_1_all_anim_std(:,:, 3) = nanstd(e3_c1,1,3);
cond_1_all_anim(:,:, 4) = nanmean(e4_c1,3);
cond_1_all_anim_std(:,:, 4) = nanstd(e4_c1,1,3);
if ~strcmp('run',trial_selection)
cond_2_all_anim(:,:, 1) = nanmean(e1_c2,3);
cond_2_all_anim_std(:,:, 1) = nanstd(e1_c2,1,3);
cond_2_all_anim(:,:, 2) = nanmean(e2_c2,3);
cond_2_all_anim_std(:,:, 2) = nanstd(e2_c2,1,3);
cond_2_all_anim(:,:, 3) = nanmean(e3_c2,3);
cond_2_all_anim_std(:,:, 3) = nanstd(e3_c2,1,3);
cond_2_all_anim(:,:, 4) = nanmean(e4_c2,3);
cond_2_all_anim_std(:,:, 4) = nanstd(e4_c2,1,3);
end
%
tickmarks = 1:30:size(cond_1_all_anim,1);
i = 1;
mn = -3
mx = 3
figure
%
if strcmp('inseq_outseq_exp', trial_selection)|| strcmp('inseqcorr_inseqincorr', trial_selection)|| strcmp('otseqcorr_otseqincorr', trial_selection)
% plot inseq correct
for elec = 1:4
subplot(2,4,i)
if strcmp('p_i', lock)
imagesc(linspace(eventWindow(1)+.0017,eventWindow(2)-.0017,size(cond_1_all_anim,2)), 1:length(freq), (cond_1_all_anim(:,101:end-100,elec))./(cond_1_all_anim_std(:,101:end-100,elec)))
elseif strcmp('p_o', lock)
imagesc(linspace(eventWindow(1)+.0017,eventWindow(2)-.0017,size(cond_1_all_anim,2)), 1:length(freq), (cond_1_all_anim(:,101:end-100,elec))./(cond_1_all_anim_std(:,101:end-100,elec)))
end
h=colorbar
ylabel(h,'group mean / group std')
set(h, 'FontSize', 12, 'FontWeight', 'bold')
caxis([mn mx])
hold on
plot(zeros(1,length(freq)), 1:length(freq),'Color','k','LineWidth',1)
set(gca, 'YTick',tickmarks,'YTickLabel',round(freq(tickmarks)), 'FontSize', 12, 'FontWeight', 'bold')
colormap jet
i = i+1;
end
% plot outseq correct
for elec = 1:4
subplot(2,4,i)
if strcmp('p_i', lock)
imagesc(linspace(eventWindow(1)+.0017,eventWindow(2)-.0017,size(cond_1_all_anim,2)), 1:length(freq), (cond_2_all_anim(:,101:end-100,elec))./(cond_2_all_anim_std(:,101:end-100,elec)))
elseif strcmp('p_o', lock)
imagesc(linspace(eventWindow(1)+.0017,eventWindow(2)-.0017,size(cond_1_all_anim,2)), 1:length(freq), (cond_2_all_anim(:,101:end-100,elec))./(cond_2_all_anim_std(:,101:end-100,elec)))
end
set(gca, 'YTick',tickmarks,'YTickLabel',round(freq(tickmarks)), 'FontSize', 12, 'FontWeight', 'bold')
h=colorbar
ylabel(h,'group mean / group std')
set(h, 'FontSize', 12, 'FontWeight', 'bold')
%caxis([round(2*mn) round(2*mx)])
caxis([mn mx])
colormap jet
hold on
plot(zeros(1,length(freq)), 1:length(freq),'Color','k','LineWidth',1)
set(gca, 'YTick',tickmarks,'YTickLabel',round(freq(tickmarks)), 'FontSize', 12, 'FontWeight', 'bold')
i = i+1;
end
elseif strcmp('inseq_outseq_con', trial_selection)
fig_title = 'INSEQ INCORR VS. OUTSEQ INCORR'
% plot inseq incorrect
for elec = 1:4
subplot(2,4,i)
if strcmp('p_i', lock)
imagesc(linspace(eventWindow(1)+.0017,eventWindow(2)-.0017,size(indiv_freq_inseq_trls_chans,2)), 1:length(freq), (cond_1_all_anim(:,:,elec))./(cond_1_all_anim_std(:,:,elec)))
mx = max(max(max([cond_1_all_anim cond_2_all_anim])));
mn = min(min(min([cond_1_all_anim cond_2_all_anim])));
elseif strcmp('p_o', lock)
imagesc(linspace(eventWindow(1)+.0017,eventWindow(2)-.0017,size(indiv_freq_inseq_trls_chans,2)), 1:length(freq), (cond_1_all_anim(:,:,elec))./(cond_1_all_anim_std(:,:,elec)))
mx = max(max(max([cond_1_all_anim cond_2_all_anim])));
mn = min(min(min([cond_1_all_anim cond_2_all_anim])));
end
h=colorbar
ylabel(h,'group mean / group std')
set(h, 'FontSize', 12, 'FontWeight', 'bold')
caxis([mn mx])
colormap jet
hold on
plot(zeros(1,length(freq)), 1:length(freq),'Color','k','LineWidth',1)
set(gca, 'YTick',tickmarks,'YTickLabel',round(freq(tickmarks)), 'FontSize', 12, 'FontWeight', 'bold')
i = i+1;
set(gca, 'FontSize', 12, 'FontWeight', 'bold')
end
% plot outseq correct
for elec = 1:4
subplot(2,4,i)
if strcmp('p_i', lock)
imagesc(linspace(eventWindow(1)+.0017,eventWindow(2)-.0017,size(indiv_freq_inseq_trls_chans,2)), 1:length(freq), (cond_2_all_anim(:,:,elec))./(cond_2_all_anim_std(:,:,elec)))
elseif strcmp('p_o', lock)
imagesc(linspace(eventWindow(1)+.0017,eventWindow(2)-.0017,size(indiv_freq_inseq_trls_chans,2)), 1:length(freq), (cond_2_all_anim(:,:,elec))./(cond_2_all_anim_std(:,:,elec)))
end
set(gca, 'YTick',tickmarks,'YTickLabel',round(freq(tickmarks)),'FontSize', 12, 'FontWeight', 'bold')
h=colorbar
ylabel(h,'group mean / group std')
set(h, 'FontSize', 12, 'FontWeight', 'bold')
caxis([mn mx])
colormap jet
hold on
plot(zeros(1,length(freq)), 1:length(freq),'Color','k','LineWidth',1)
set(gca, 'YTick',tickmarks,'YTickLabel',round(freq(tickmarks)))
i = i+1;
set(gca, 'FontSize', 12, 'FontWeight', 'bold')
end
elseif strcmp('inseqcorr_outseqincorr', trial_selection)
% plot inseq incorrect
for elec = 1:4
subplot(1,4,elec)
imagesc(linspace(-1+.0017,1-.0017,size(indiv_freq_inseq_trls_chans,2)), 1:length(freq), (cond_1_all_anim(:,:,elec))./(cond_1_all_anim_std(:,:,elec)))
mx = max(max(max([cond_1_all_anim ])));
mn = min(min(min([cond_1_all_anim ])));
h=colorbar
ylabel(h,'group mean / group std')
set(h, 'FontSize', 12, 'FontWeight', 'bold')
caxis([-4 5])
colormap jet
hold on
plot(zeros(1,length(freq)), 1:length(freq),'Color','k','LineWidth',1)
set(gca, 'YTick',tickmarks,'YTickLabel',round(freq(tickmarks)), 'FontSize', 12, 'FontWeight', 'bold')
i = i+1;
set(gca, 'FontSize', 12, 'FontWeight', 'bold')
end
elseif strcmp('run', trial_selection)
for elec = 1:4
subplot(1,4,elec)
imagesc(linspace(-.5+.0017,.5-.0017,size(cond1,2)), 1:length(freq), (cond_1_all_anim(:,101:end-100,elec))./(cond_1_all_anim_std(:,101:end-100,elec)))
% mx = max(max(max([cond_1_all_anim ])));
% mn = min(min(min([cond_1_all_anim ])));
h=colorbar
ylabel(h,'group mean / group std')
set(h, 'FontSize', 12, 'FontWeight', 'bold')
caxis([mn mx])
colormap jet
hold on
plot(zeros(1,length(freq)), 1:length(freq),'Color','k','LineWidth',1)
set(gca, 'YTick',tickmarks,'YTickLabel',round(freq(tickmarks)), 'FontSize', 12, 'FontWeight', 'bold')
i = i+1;
set(gca, 'FontSize', 12, 'FontWeight', 'bold')
end
end
set(gca, 'FontSize', 14, 'FontWeight', 'bold')
%% make plot with out T ratio - only group average
tickmarks = 1:30:size(cond_2_all_anim,1);
i = 1;
mn = -.8
mx = .8
figure
for elec = 1:4
subplot(2,4,i)
if strcmp('p_i', lock)
imagesc(linspace(eventWindow(1)+.0017,eventWindow(2)-.0017,size(cond_1_all_anim,2)), 1:length(freq), (cond_1_all_anim(:,101:end-100,elec)))
elseif strcmp('p_o', lock)
imagesc(linspace(eventWindow(1)+.0017,eventWindow(2)-.0017,size(cond_1_all_anim,2)), 1:length(freq), (cond_1_all_anim(:,101:end-100,elec)))
end
h=colorbar
ylabel(h,'group mean')
set(h, 'FontSize', 12, 'FontWeight', 'bold')
caxis([mn mx])
hold on
plot(zeros(1,length(freq)), 1:length(freq),'Color','k','LineWidth',1)
set(gca, 'YTick',tickmarks,'YTickLabel',round(freq(tickmarks)), 'FontSize', 12, 'FontWeight', 'bold')
colormap jet
i = i+1;
end
% plot outseq correct
for elec = 1:4
subplot(2,4,i)
if strcmp('p_i', lock)
imagesc(linspace(eventWindow(1)+.0017,eventWindow(2)-.0017,size(cond_1_all_anim,2)), 1:length(freq), (cond_2_all_anim(:,101:end-100,elec)))
elseif strcmp('p_o', lock)
imagesc(linspace(eventWindow(1)+.0017,eventWindow(2)-.0017,size(cond_1_all_anim,2)), 1:length(freq), (cond_2_all_anim(:,101:end-100,elec)))
end
set(gca, 'YTick',tickmarks,'YTickLabel',round(freq(tickmarks)), 'FontSize', 12, 'FontWeight', 'bold')
h=colorbar
ylabel(h,'group mean ')
set(h, 'FontSize', 12, 'FontWeight', 'bold')
%caxis([round(2*mn) round(2*mx)])
caxis([mn mx])
colormap jet
hold on
plot(zeros(1,length(freq)), 1:length(freq),'Color','k','LineWidth',1)
set(gca, 'YTick',tickmarks,'YTickLabel',round(freq(tickmarks)), 'FontSize', 12, 'FontWeight', 'bold')
i = i+1;
end
%% group mean not a t ratio for running
figure
for elec = 1:4
subplot(1,4,elec)
imagesc(linspace(-.5+.0017,.5-.0017,size(cond1,2)), 1:length(freq), (cond_1_all_anim(:,101:end-100,elec)))
h=colorbar
ylabel(h,'group mean')
set(h, 'FontSize', 12, 'FontWeight', 'bold')
caxis([mn mx])
colormap jet
hold on
plot(zeros(1,length(freq)), 1:length(freq),'Color','k','LineWidth',1)
set(gca, 'YTick',tickmarks,'YTickLabel',round(freq(tickmarks)), 'FontSize', 12, 'FontWeight', 'bold')
i = i+1;
set(gca, 'FontSize', 12, 'FontWeight', 'bold')
end
%%
per =1;
tickmarks = 1:30:size(cond_1_all_anim_std,1);
i = 1;
figure
if strcmp('inseq_outseq_exp', trial_selection)
fig_title = 'INSEQ CORR VS. OUTSEQ CORR'
% plot inseq correct
for elec = 1:4
subplot(2,4,i)
if strcmp('p_i', lock)
imagesc(linspace(-.5+.0017,minimum_RT_outseq-.0017,size(indiv_freq_inseq_trls_chans,2)), 1:length(freq), (cond_1_all_anim_std(:,:,elec)))
mx = max(max(max([cond_2_all_anim_std cond_1_all_anim_std])));
mn = min(min(min([cond_2_all_anim_std cond_1_all_anim_std])));
elseif strcmp('p_o', lock)
imagesc(linspace(-1+.0017,1-.0017,size(indiv_freq_inseq_trls_chans,2)), 1:length(freq), (cond_1_all_anim_std(:,:,elec)))
mx = max(max(max([cond_1_all_anim_std cond_2_all_anim_std])));
mn = min(min(min([cond_1_all_anim_std cond_2_all_anim_std])));
end
h=colorbar
ylabel(h,'SD')
caxis([mx mn])
hold on
plot(zeros(1,length(freq)), 1:length(freq),'Color','k','LineWidth',1)
set(gca, 'YTick',tickmarks,'YTickLabel',round(freq(tickmarks)))
i = i+1;
end
% plot outseq correct
for elec = 1:4
subplot(2,4,i)
if strcmp('p_i', lock)
imagesc(linspace(-.5+.0017,minimum_RT_outseq-.0017,size(indiv_freq_inseq_trls_chans,2)), 1:length(freq), cond_2_all_anim_std(:,:,elec))
elseif strcmp('p_o', lock)
imagesc(linspace(-1+.0017,1-.0017,size(indiv_freq_inseq_trls_chans,2)), 1:length(freq), cond_2_all_anim_std(:,:,elec))
end
set(gca, 'YTick',tickmarks,'YTickLabel',round(freq(tickmarks)))
colorbar
caxis([mx mn])
hold on
plot(zeros(1,length(freq)), 1:length(freq),'Color','k','LineWidth',1)
set(gca, 'YTick',tickmarks,'YTickLabel',round(freq(tickmarks)))
i = i+1;
end
elseif strcmp('inseq_outseq_con', trial_selection)
fig_title = 'INSEQ INCORR VS. OUTSEQ INCORR'
% plot inseq incorrect
for elec = 1:4
subplot(2,4,i)
if strcmp('p_i', lock)
imagesc(linspace(-.5+.0017,minimum_RT_outseq-.0017,size(indiv_freq_inseq_trls_chans,2)), 1:length(freq), cond_1_all_anim(:,:,elec))
mx = max(max(max([cond_1_all_anim cond_2_all_anim])));
mn = min(min(min([cond_1_all_anim cond_2_all_anim])));
elseif strcmp('p_o', lock)
imagesc(linspace(-1+.0017,1-.0017,size(indiv_freq_inseq_trls_chans,2)), 1:length(freq), cond_1_all_anim(:,:,elec))
mx = max(max(max([cond_1_all_anim_std cond_1_all_anim_std])));
mn = min(min(min([cond_1_all_anim_std cond_1_all_anim_std])));
end
colorbar
hold on
plot(zeros(1,length(freq)), 1:length(freq),'Color','k','LineWidth',1)
set(gca, 'YTick',tickmarks,'YTickLabel',round(freq(tickmarks)))
i = i+1;
end
% plot outseq correct
for elec = 1:4
subplot(2,4,i)
if strcmp('p_i', lock)
imagesc(linspace(-.5+.0017,minimum_RT_outseq-.0017,size(indiv_freq_inseq_trls_chans,2)), 1:length(freq), cond_2_all_anim_std(:,:,elec))
elseif strcmp('p_o', lock)
imagesc(linspace(-1+.0017,1-.0017,size(indiv_freq_inseq_trls_chans,2)), 1:length(freq), cond_2_all_anim_std(:,:,elec))
end
set(gca, 'YTick',tickmarks,'YTickLabel',round(freq(tickmarks)))
colorbar
caxis([mn per*mx])
hold on
plot(zeros(1,length(freq)), 1:length(freq),'Color','k','LineWidth',1)
set(gca, 'YTick',tickmarks,'YTickLabel',round(freq(tickmarks)))
i = i+1;
end
end
supertitle(fig_title)
set(gca, 'FontSize', 12, 'FontWeight', 'bold')