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The exact SSA from Gillespie isn't practical at scale. An approximate (i.e. tau leaping) approach could use the same interface (plus some additional simulation precision parameters).
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I would love to see this in action.... I had some concerns about tau leaping before reverting to the degenerate case (getting stuck in a state where it is just advancing at the smallest time step) but it would be great to see a more convincing demonstration.
Tau leaping will really shine in cases where a system is well modeled as ODEs, but for one reason or another you still want discretization or stochasticity.
Unfortunately not; that implementation was very system-specific. There may be some adaptable elements but it will largely be a ground-up implementation.
The exact SSA from Gillespie isn't practical at scale. An approximate (i.e. tau leaping) approach could use the same interface (plus some additional simulation precision parameters).
The text was updated successfully, but these errors were encountered: