diff --git a/_sources/moddoc_core.rst.txt b/_sources/moddoc_core.rst.txt index 9120e683..452a1eac 100644 --- a/_sources/moddoc_core.rst.txt +++ b/_sources/moddoc_core.rst.txt @@ -1966,7 +1966,7 @@ Collection of timestreams indexed by logical detector ID ``G3TimestreamMap( (G3TimestreamMap)arg2)`` - ``G3TimestreamMap( (StringVector)keys, (object)data [, (G3Time)start= [, (G3Time)stop= [, (G3TimestreamUnits)units=spt3g.core.G3TimestreamUnits.None [, (int)compression_level=0 [, (bool)copy_data=True]]]]])`` : + ``G3TimestreamMap( (StringVector)keys, (object)data [, (G3Time)start= [, (G3Time)stop= [, (G3TimestreamUnits)units=spt3g.core.G3TimestreamUnits.None [, (int)compression_level=0 [, (bool)copy_data=True]]]]])`` : Create a timestream map from a numpy array or other numeric python iterable. Each row of the 2D input array will correspond to a single timestream, with the key set to the correspondingly-indexed entry of . If is True (default), the data will be copied into the output data structure. If False, the timestream map will provide a view into the given numpy array. ``G3TimestreamMap( (list)arg2)`` : diff --git a/_sources/moddoc_maps.rst.txt b/_sources/moddoc_maps.rst.txt index 1436fb88..0354f250 100644 --- a/_sources/moddoc_maps.rst.txt +++ b/_sources/moddoc_maps.rst.txt @@ -1388,21 +1388,59 @@ minimize memory use. **spt3g.maps.map_modules.CoaddMaps** -Coadd maps and weights. - +Coadd maps and weights, optionally collating by map Id. This class can be +used as an argument to ``pipe.Add()`` as a standard pipeline module, or +instantiated as a standalone instance. In the latter case, the object is +treated as a callable for input map frames, and the ``coadd_frame`` or +``coadd_frames`` attribute contains the running coadd(s). + +The output coadd frames contain two additional keys: ``'InputMapIds'`` and +``'InputFiles'``, which are both lists of unique map Id's and filenames that +are associated with the frames that contribute to each coadd. When one +coadd is added to another, these keys are updated recursively, so that the +resulting coadd includes the Id's and filenames that contributed to both +itself and the other coadd. The list of filenames can be populated by +combining this module with a G3Reader whose ``track_filename`` option is set +to True; however, this feature is fragile and may not work as expected with +complex pipelines. + +*Attributes:* + coadd_frame : G3Frame + Output coadd map frame, also injected into the pipeline on + EndProcessing. This attribute is only populated if the ``collate`` + option is set to False. + coadd_frames : dict of G3Frames + Output coadd map frames, keyed by input map Id. Each frame is also + injected into the pipeline on EndProcessing. This attribute is only + populated if the ``collate`` option is set to True. + *Arguments:* map_ids : list of str - List of map Id's to include in the coadd. If None, any maps + List of map Id's to include in the coadd(s). If None, any maps in the pipeline are included. output_map_id : str - Id to assign to the output frame. + Id to assign to the output frame. If ``collate`` is True, this argument + is required and treated as a prefix to which each input map Id is + appended. + collate : bool + If True, coadd unique map Id's into separate output map frames. + weighted : bool + If True (default), ensure that maps have had weights applied before + coadding. Otherwise, coadd maps without checking the weights. ignore_missing_weights : bool If False (default), a warning is issued when the frame contains weighted Stokes maps without a weights map. Set this option to True when feeding single bolometer map frames with common weights through a pipeline. + drop_input_frames : bool + If True, drop input map frames from the pipeline. + map_id_function : callable + If supplied, use this callable to extract a map_id from the input map + frames. Otherwise, use ``frame["Id"]``. The function should take a + single frame object as an argument and return a string value to match + against ``map_ids``, or ``None`` if a valid Id cannot be constructed. *Constructor:* - ``CoaddMaps(self, map_ids=None, output_map_id=None, ignore_missing_weights=False)`` + ``CoaddMaps(self, map_ids=None, output_map_id='Coadd', collate=False, weighted=True, ignore_missing_weights=False, drop_input_frames=False, map_id_function=None)`` @@ -1706,6 +1744,8 @@ Functions in spt3g.maps * spt3g.maps.make_point_source_mask_ +* spt3g.maps.map_modules.coadd_map_files_ + * spt3g.maps.maputils.flatsky_to_healpix_ * spt3g.maps.maputils.healpix_to_flatsky_ @@ -2011,6 +2051,42 @@ over all pixels. The former produces output that is equivalent to using Construct a mask from the input stub map with pixels within the given radius around each point source position set to 1. +.. _spt3g.maps.map_modules.coadd_map_files: + +**spt3g.maps.map_modules.coadd_map_files** + +Coadd map files, optionally collating map Id's into separate frames. + +*Arguments:* + input_files : list of str + List of input files to feed through the pipeline. + output_file : str + Output G3 filename. If not supplied, the output frames are + returned without saving to disk. + map_ids : list of str + A list of map Id's to include in the coadd(s). + output_map_id : str + Id to use for the output map frame. If ``collate`` is True, + this is the prefix applied to each output frame, with the + input map Id appended to it. + collate : bool + If True, coadd individual map Id's into separate map frames. + Otherwise, all map frames are coadded into one output frame. + weighted : bool + If True, ensure that weights have been applied before coadding. + Otherwise, the input maps are coadded as they are. + +*Returns:* + maps : G3Frame or dict of G3Frames + If ``collate`` is True, returns a dictionary of map frames + keyed by Id. Otherwise, returns a single map frame. + +*Definition:* + ``coadd_map_files(input_files, output_file=None, map_ids=None, output_map_id='Coadd', collate=False, weighted=True)`` + + + + .. _spt3g.maps.maputils.flatsky_to_healpix: **spt3g.maps.maputils.flatsky_to_healpix** diff --git a/moddoc_core.html b/moddoc_core.html index c38adf8c..c1c056aa 100644 --- a/moddoc_core.html +++ b/moddoc_core.html @@ -1368,7 +1368,7 @@

Frame Objects in spt3g.coreG3TimestreamMap()

G3TimestreamMap( (G3TimestreamMap)arg2)

-
G3TimestreamMap( (StringVector)keys, (object)data [, (G3Time)start=<spt3g.core.G3Time object at 0x7f6c09969eb0> [, (G3Time)stop=<spt3g.core.G3Time object at 0x7f6c09969f20> [, (G3TimestreamUnits)units=spt3g.core.G3TimestreamUnits.None [, (int)compression_level=0 [, (bool)copy_data=True]]]]]) :

Create a timestream map from a numpy array or other numeric python iterable. Each row of the 2D input array will correspond to a single timestream, with the key set to the correspondingly-indexed entry of <keys>. If <copy_data> is True (default), the data will be copied into the output data structure. If False, the timestream map will provide a view into the given numpy array.

+
G3TimestreamMap( (StringVector)keys, (object)data [, (G3Time)start=<spt3g.core.G3Time object at 0x7f68366e3eb0> [, (G3Time)stop=<spt3g.core.G3Time object at 0x7f68366e3f20> [, (G3TimestreamUnits)units=spt3g.core.G3TimestreamUnits.None [, (int)compression_level=0 [, (bool)copy_data=True]]]]]) :

Create a timestream map from a numpy array or other numeric python iterable. Each row of the 2D input array will correspond to a single timestream, with the key set to the correspondingly-indexed entry of <keys>. If <copy_data> is True (default), the data will be copied into the output data structure. If False, the timestream map will provide a view into the given numpy array.

G3TimestreamMap( (list)arg2) :

Initialize with keys and values from a Python dictionary: {‘key’:’value’}

diff --git a/moddoc_maps.html b/moddoc_maps.html index b059a9b9..d5ce805c 100644 --- a/moddoc_maps.html +++ b/moddoc_maps.html @@ -1021,21 +1021,59 @@

Modules in spt3g.maps

spt3g.maps.map_modules.CoaddMaps

-

Coadd maps and weights.

-
+

Coadd maps and weights, optionally collating by map Id. This class can be +used as an argument to pipe.Add() as a standard pipeline module, or +instantiated as a standalone instance. In the latter case, the object is +treated as a callable for input map frames, and the coadd_frame or +coadd_frames attribute contains the running coadd(s).

+

The output coadd frames contain two additional keys: 'InputMapIds' and +'InputFiles', which are both lists of unique map Id’s and filenames that +are associated with the frames that contribute to each coadd. When one +coadd is added to another, these keys are updated recursively, so that the +resulting coadd includes the Id’s and filenames that contributed to both +itself and the other coadd. The list of filenames can be populated by +combining this module with a G3Reader whose track_filename option is set +to True; however, this feature is fragile and may not work as expected with +complex pipelines.

+
+
Attributes:
+
coadd_frameG3Frame

Output coadd map frame, also injected into the pipeline on +EndProcessing. This attribute is only populated if the collate +option is set to False.

+
+
coadd_framesdict of G3Frames

Output coadd map frames, keyed by input map Id. Each frame is also +injected into the pipeline on EndProcessing. This attribute is only +populated if the collate option is set to True.

+
+
+
Arguments:
-
map_idslist of str

List of map Id’s to include in the coadd. If None, any maps +

map_idslist of str

List of map Id’s to include in the coadd(s). If None, any maps in the pipeline are included.

-
output_map_idstr

Id to assign to the output frame.

+
output_map_idstr

Id to assign to the output frame. If collate is True, this argument +is required and treated as a prefix to which each input map Id is +appended.

+
+
collatebool

If True, coadd unique map Id’s into separate output map frames.

+
+
weightedbool

If True (default), ensure that maps have had weights applied before +coadding. Otherwise, coadd maps without checking the weights.

ignore_missing_weightsbool

If False (default), a warning is issued when the frame contains weighted Stokes maps without a weights map. Set this option to True when feeding single bolometer map frames with common weights through a pipeline.

+
drop_input_framesbool

If True, drop input map frames from the pipeline.

+
+
map_id_functioncallable

If supplied, use this callable to extract a map_id from the input map +frames. Otherwise, use frame["Id"]. The function should take a +single frame object as an argument and return a string value to match +against map_ids, or None if a valid Id cannot be constructed.

+
-
Constructor:

CoaddMaps(self, map_ids=None, output_map_id=None, ignore_missing_weights=False)

+
Constructor:

CoaddMaps(self, map_ids=None, output_map_id='Coadd', collate=False, weighted=True, ignore_missing_weights=False, drop_input_frames=False, map_id_function=None)

spt3g.maps.map_modules.CompactMaps

@@ -1241,6 +1279,7 @@

Functions in spt3g.maps

spt3g.maps.get_ra_dec_map

  • spt3g.maps.get_ra_dec_mask

  • spt3g.maps.make_point_source_mask

    • +

  • spt3g.maps.map_modules.coadd_map_files

  • spt3g.maps.maputils.flatsky_to_healpix

  • spt3g.maps.maputils.healpix_to_flatsky

  • spt3g.maps.offsets_to_quat

    • @@ -1457,6 +1496,38 @@

    Functions in spt3g.mapsmake_point_source_mask( (object)map, (DoubleVector)ra, (DoubleVector)dec, (DoubleVector)radius) -> G3SkyMapMask :

    Construct a mask from the input stub map with pixels within the given radius around each point source position set to 1.

    +

    spt3g.maps.map_modules.coadd_map_files

    +

    Coadd map files, optionally collating map Id’s into separate frames.

    +
    +
    Arguments:
    +
    input_fileslist of str

    List of input files to feed through the pipeline.

    +
    +
    output_filestr

    Output G3 filename. If not supplied, the output frames are +returned without saving to disk.

    +
    +
    map_idslist of str

    A list of map Id’s to include in the coadd(s).

    +
    +
    output_map_idstr

    Id to use for the output map frame. If collate is True, +this is the prefix applied to each output frame, with the +input map Id appended to it.

    +
    +
    collatebool

    If True, coadd individual map Id’s into separate map frames. +Otherwise, all map frames are coadded into one output frame.

    +
    +
    weightedbool

    If True, ensure that weights have been applied before coadding. +Otherwise, the input maps are coadded as they are.

    +
    +
    +
    +
    Returns:
    +
    mapsG3Frame or dict of G3Frames

    If collate is True, returns a dictionary of map frames +keyed by Id. Otherwise, returns a single map frame.

    +
    +
    +
    +
    Definition:

    coadd_map_files(input_files, output_file=None, map_ids=None, output_map_id='Coadd', collate=False, weighted=True)

    +
    +

    spt3g.maps.maputils.flatsky_to_healpix

    Re-pixelize a map to Healpix from one of the flat projections.

    diff --git a/objects.inv b/objects.inv index 30e598aa..6de917a9 100644 Binary files a/objects.inv and b/objects.inv differ diff --git a/searchindex.js b/searchindex.js index 6e6f5631..087ea6a1 100644 --- a/searchindex.js +++ b/searchindex.js @@ -1 +1 @@ -Search.setIndex({"docnames": ["autodoc", "buildsystem", "commonissues", "dataacquisition", "fileio", "frames", "index", "logging", "moddoc_calibration", "moddoc_core", "moddoc_dfmux", "moddoc_gcp", "moddoc_maps", "moddoc_mpi", "modules", "networkstreaming", "quickstart", "styleguide", "units"], "filenames": ["autodoc.rst", "buildsystem.rst", "commonissues.rst", "dataacquisition.rst", "fileio.rst", "frames.rst", "index.rst", "logging.rst", "moddoc_calibration.rst", "moddoc_core.rst", "moddoc_dfmux.rst", "moddoc_gcp.rst", "moddoc_maps.rst", "moddoc_mpi.rst", "modules.rst", "networkstreaming.rst", "quickstart.rst", "styleguide.rst", "units.rst"], "titles": ["Auto-documentation", "Build System", "Common Problems", "Data Acquisition", "File IO", "Frames", "SPT3G Software", "Logging", "calibration", "core", "dfmux", "gcp", "maps", "mpi", "Modules", "Network Streaming", "Quick Start", "Style Guide", "Units"], "terms": {"The": [0, 1, 2, 4, 5, 6, 7, 8, 9, 11, 12, 13, 15, 16, 17, 18], "spt3g": [0, 1, 13, 14, 15, 16, 17], "softwar": [0, 3, 4, 5, 7, 9, 10, 14, 15, 16, 18], "can": [0, 1, 2, 3, 4, 5, 6, 7, 9, 10, 11, 12, 13, 14, 15, 16, 17], "automat": [0, 1, 5, 8, 14], "gener": [0, 1, 3, 5, 9, 10, 12, 13, 14, 16, 17], "modul": [0, 1, 2, 3, 4, 5, 7, 13, 15, 17], "function": [0, 1, 2, 3, 4, 5, 6, 7, 13, 16, 17, 18], "all": [0, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18], "directori": [0, 1, 3, 4, 9, 16], "repositori": [0, 1, 3, 16, 17], "varieti": [0, 3, 9, 16], "format": [0, 6, 7, 9, 11, 15, 16, 17], "To": [0, 1, 2, 3, 4, 9, 12, 14, 15, 16, 17], "default": [0, 3, 7, 8, 9, 10, 11, 12, 14, 15, 16, 17], "html": [0, 16], "run": [0, 1, 2, 3, 4, 5, 10, 11, 12, 15, 16, 17], "make": [0, 1, 3, 4, 5, 10, 12, 13, 14, 15, 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