From 8f2a6fd8ca5cf68a2b79bab52c24ceae6802b400 Mon Sep 17 00:00:00 2001 From: Daniel Stribling Date: Fri, 6 Oct 2023 09:25:47 -0400 Subject: [PATCH 1/5] Update hash.tsv --- combinations/hash.tsv | 1 + 1 file changed, 1 insertion(+) diff --git a/combinations/hash.tsv b/combinations/hash.tsv index dbe5520a7..f171accad 100644 --- a/combinations/hash.tsv +++ b/combinations/hash.tsv @@ -476,3 +476,4 @@ tensorflow=2.10.0,scikit-learn=1.1.2,umap-learn=0.5.3,matplotlib=3.6.0 pretextgraph=0.0.6,ucsc-bedtobigbed=447 pretextgraph=0.0.6,ucsc-bigwigtobedgraph=448 sra-tools=3.0.8,pigz=2.6 +python=3.10,pydeseq2=0.4.1,biopython=1.80,numpy=1.25.2,pandas=2.1.1,pysam=0.21.0,argparse=1.4.0,matplotlib=3.6.0,gzip=1.12 From 8b879fccc02279b4e575725419db25c5771f30fc Mon Sep 17 00:00:00 2001 From: Daniel Stribling Date: Fri, 6 Oct 2023 09:51:07 -0400 Subject: [PATCH 2/5] Update hash.tsv --- combinations/hash.tsv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/combinations/hash.tsv b/combinations/hash.tsv index f171accad..5502d9856 100644 --- a/combinations/hash.tsv +++ b/combinations/hash.tsv @@ -476,4 +476,4 @@ tensorflow=2.10.0,scikit-learn=1.1.2,umap-learn=0.5.3,matplotlib=3.6.0 pretextgraph=0.0.6,ucsc-bedtobigbed=447 pretextgraph=0.0.6,ucsc-bigwigtobedgraph=448 sra-tools=3.0.8,pigz=2.6 -python=3.10,pydeseq2=0.4.1,biopython=1.80,numpy=1.25.2,pandas=2.1.1,pysam=0.21.0,argparse=1.4.0,matplotlib=3.6.0,gzip=1.12 +python=3.10,pydeseq2=0.4.1,biopython=1.80,numpy=1.25.2,pandas=2.1.1,pysam=0.21.0,matplotlib=3.6.0,gzip=1.12,hybkit=0.3.3 From b272a43ae74d3414d72bab5126e291aebaf8c2e2 Mon Sep 17 00:00:00 2001 From: Daniel Stribling Date: Fri, 6 Oct 2023 10:00:18 -0400 Subject: [PATCH 3/5] Update hash.tsv --- combinations/hash.tsv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/combinations/hash.tsv b/combinations/hash.tsv index 5502d9856..cd49f8a72 100644 --- a/combinations/hash.tsv +++ b/combinations/hash.tsv @@ -476,4 +476,4 @@ tensorflow=2.10.0,scikit-learn=1.1.2,umap-learn=0.5.3,matplotlib=3.6.0 pretextgraph=0.0.6,ucsc-bedtobigbed=447 pretextgraph=0.0.6,ucsc-bigwigtobedgraph=448 sra-tools=3.0.8,pigz=2.6 -python=3.10,pydeseq2=0.4.1,biopython=1.80,numpy=1.25.2,pandas=2.1.1,pysam=0.21.0,matplotlib=3.6.0,gzip=1.12,hybkit=0.3.3 +python=3.10,pydeseq2=0.4.1,biopython=1.81,numpy=1.26.0,pandas=2.1.1,pysam=0.21.0,matplotlib=3.8,gzip=1.12,hybkit=0.3.3 From 016572111308cadd69475d3e0739b461ac0a7277 Mon Sep 17 00:00:00 2001 From: Daniel Stribling Date: Fri, 6 Oct 2023 10:03:43 -0400 Subject: [PATCH 4/5] Update hash.tsv --- combinations/hash.tsv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/combinations/hash.tsv b/combinations/hash.tsv index cd49f8a72..7f773143a 100644 --- a/combinations/hash.tsv +++ b/combinations/hash.tsv @@ -476,4 +476,4 @@ tensorflow=2.10.0,scikit-learn=1.1.2,umap-learn=0.5.3,matplotlib=3.6.0 pretextgraph=0.0.6,ucsc-bedtobigbed=447 pretextgraph=0.0.6,ucsc-bigwigtobedgraph=448 sra-tools=3.0.8,pigz=2.6 -python=3.10,pydeseq2=0.4.1,biopython=1.81,numpy=1.26.0,pandas=2.1.1,pysam=0.21.0,matplotlib=3.8,gzip=1.12,hybkit=0.3.3 +python=3.10,pydeseq2=0.4.1,biopython=1.81,numpy=1.26.0,pandas=2.1.1,pysam=0.21.0,matplotlib=3.8,gzip=1.12,hybkit=0.3.3,natsort=7.1.1 From f2a0f4e800f5032bf2b83d32189af839b5b0cb93 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bj=C3=B6rn=20Gr=C3=BCning?= Date: Sat, 7 Oct 2023 21:34:36 +0200 Subject: [PATCH 5/5] Update combinations/hash.tsv --- combinations/hash.tsv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/combinations/hash.tsv b/combinations/hash.tsv index 7f773143a..fb839c8db 100644 --- a/combinations/hash.tsv +++ b/combinations/hash.tsv @@ -476,4 +476,4 @@ tensorflow=2.10.0,scikit-learn=1.1.2,umap-learn=0.5.3,matplotlib=3.6.0 pretextgraph=0.0.6,ucsc-bedtobigbed=447 pretextgraph=0.0.6,ucsc-bigwigtobedgraph=448 sra-tools=3.0.8,pigz=2.6 -python=3.10,pydeseq2=0.4.1,biopython=1.81,numpy=1.26.0,pandas=2.1.1,pysam=0.21.0,matplotlib=3.8,gzip=1.12,hybkit=0.3.3,natsort=7.1.1 +pydeseq2=0.4.1,biopython=1.81,numpy=1.26.0,pandas=2.1.1,pysam=0.21.0,matplotlib=3.8,gzip=1.12,hybkit=0.3.3,natsort=7.1.1