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windows tests failing due to missing MDAnalysis #10

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orbeckst opened this issue Nov 19, 2024 · 3 comments
Open

windows tests failing due to missing MDAnalysis #10

orbeckst opened this issue Nov 19, 2024 · 3 comments

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@orbeckst
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Tests for all windows are failing because MDAnalysis is not being installed.

Example: https://github.com/Becksteinlab/basicrta/actions/runs/11904145945/job/33172432713

Run mamba install -y -c conda-forge MDAnalysis MDAnalysisTests
  
Microsoft Windows [Version 10.0.20348.2849]
(c) Microsoft Corporation. All rights reserved.
D:\a\basicrta\basicrta>

Run pyver=$(python -c 'import MDAnalysis; print(MDAnalysis.__version__)')
  
Traceback (most recent call last):
  File "<string>", line 1, in <module>
ModuleNotFoundError: No module named 'MDAnalysis'
Error: Process completed with exit code 1.
@orbeckst
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@rsexton2 it might be worthwhile to ask in an MDAnalysis forum (Discord or GH Discussions for MDAKits) if this is a known problem at the moment.

@orbeckst
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@rsexton2 if we can't fix this immediately, comment out windows for now

@rsexton2
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This issue is not unique to us.
I asked on the MDA discord and Fiona informed me that this has been occurring elsewhere.
I'll keep an eye out for a solution but we may be able to downgrade setup-miniconda to v2 for now.
Not sure if all else will work but I'll get back to you on that

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