From fa720a5ace72a433c9db7c46c014afd229693750 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20F=2E=20Unger?= <joerg.unger@bam.de>
Date: Thu, 10 Nov 2022 17:19:49 +0100
Subject: [PATCH 1/4] fix test cylinder simulation and rm aux files

---
 tests/emoduls_simulation/mesh/cylinder.h5     |  Bin 24866 -> 0 bytes
 tests/emoduls_simulation/mesh/cylinder.msh    | 1136 -----------------
 tests/emoduls_simulation/mesh/cylinder.xdmf   |    1 -
 .../test_cylinder_simulation.py               |   13 +-
 4 files changed, 10 insertions(+), 1140 deletions(-)
 delete mode 100644 tests/emoduls_simulation/mesh/cylinder.h5
 delete mode 100644 tests/emoduls_simulation/mesh/cylinder.msh
 delete mode 100644 tests/emoduls_simulation/mesh/cylinder.xdmf

diff --git a/tests/emoduls_simulation/mesh/cylinder.h5 b/tests/emoduls_simulation/mesh/cylinder.h5
deleted file mode 100644
index 75bd34fb7910c4f8374c62c4c29a85a7df159c4d..0000000000000000000000000000000000000000
GIT binary patch
literal 0
HcmV?d00001

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diff --git a/tests/emoduls_simulation/mesh/cylinder.xdmf b/tests/emoduls_simulation/mesh/cylinder.xdmf
deleted file mode 100644
index 03f6a8423..000000000
--- a/tests/emoduls_simulation/mesh/cylinder.xdmf
+++ /dev/null
@@ -1 +0,0 @@
-<Xdmf Version="3.0"><Domain><Grid Name="Grid"><Geometry GeometryType="XYZ"><DataItem DataType="Float" Dimensions="218 3" Format="HDF" Precision="8">cylinder.h5:/data0</DataItem></Geometry><Topology TopologyType="Tetrahedron" NumberOfElements="669" NodesPerElement="4"><DataItem DataType="Int" Dimensions="669 4" Format="HDF" Precision="8">cylinder.h5:/data1</DataItem></Topology><Attribute Name="gmsh:dim_tags" AttributeType="Vector" Center="Node"><DataItem DataType="Int" Dimensions="218 2" Format="HDF" Precision="8">cylinder.h5:/data2</DataItem></Attribute><Attribute Name="gmsh:physical" AttributeType="Scalar" Center="Cell"><DataItem DataType="Int" Dimensions="669" Format="HDF" Precision="8">cylinder.h5:/data3</DataItem></Attribute><Attribute Name="gmsh:geometrical" AttributeType="Scalar" Center="Cell"><DataItem DataType="Int" Dimensions="669" Format="HDF" Precision="8">cylinder.h5:/data4</DataItem></Attribute></Grid></Domain></Xdmf>
\ No newline at end of file
diff --git a/tests/emoduls_simulation/test_cylinder_simulation.py b/tests/emoduls_simulation/test_cylinder_simulation.py
index 43be50830..d06277545 100644
--- a/tests/emoduls_simulation/test_cylinder_simulation.py
+++ b/tests/emoduls_simulation/test_cylinder_simulation.py
@@ -4,11 +4,12 @@
 
 import pytest
 
+
 def test_cylinder_simulation():
     """Tesing the cylinder simulation
     
     This test is checking if the conda package is correctly installed"""
-    
+
     parameters = fenics_concrete.Parameters()  # using the current default values
 
     parameters['E'] = 3000
@@ -18,7 +19,7 @@ def test_cylinder_simulation():
     parameters['dim'] = 3
 
     parameters['log_level'] = 'WARNING'
-    parameters['bc_setting'] = 'fixed'
+    parameters['bc_setting'] = 'free'
     parameters['mesh_density'] = 6
 
     displacement = -3
@@ -37,4 +38,10 @@ def test_cylinder_simulation():
     # last measurement
     measured_force = problem.sensors[sensor.name].data[-1]
 
-    assert measured_force == pytest.approx(-543420.1153566426)
\ No newline at end of file
+    # exact solution for free bc
+    exact_solution = np.pi * parameters['radius'] ** 2 * parameters['E'] * displacement / parameters['height']
+
+    #scaling factor due to an error resulting from the discretization
+    rel_discretization_error = 1.012722
+
+    assert measured_force == pytest.approx(rel_discretization_error*exact_solution)

From 1c7753c6f2781355292248040b6077bf518c808c Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20F=2E=20Unger?= <joerg.unger@bam.de>
Date: Thu, 10 Nov 2022 17:28:40 +0100
Subject: [PATCH 2/4] format test_cylinder_simulation using black

---
 .../test_cylinder_simulation.py               | 32 +++++++++++--------
 1 file changed, 19 insertions(+), 13 deletions(-)

diff --git a/tests/emoduls_simulation/test_cylinder_simulation.py b/tests/emoduls_simulation/test_cylinder_simulation.py
index d06277545..6eabcebda 100644
--- a/tests/emoduls_simulation/test_cylinder_simulation.py
+++ b/tests/emoduls_simulation/test_cylinder_simulation.py
@@ -7,20 +7,20 @@
 
 def test_cylinder_simulation():
     """Tesing the cylinder simulation
-    
+
     This test is checking if the conda package is correctly installed"""
 
     parameters = fenics_concrete.Parameters()  # using the current default values
 
-    parameters['E'] = 3000
-    parameters['nu'] = 0.2
-    parameters['radius'] = 75
-    parameters['height'] = 300
-    parameters['dim'] = 3
+    parameters["E"] = 3000
+    parameters["nu"] = 0.2
+    parameters["radius"] = 75
+    parameters["height"] = 300
+    parameters["dim"] = 3
 
-    parameters['log_level'] = 'WARNING'
-    parameters['bc_setting'] = 'free'
-    parameters['mesh_density'] = 6
+    parameters["log_level"] = "WARNING"
+    parameters["bc_setting"] = "free"
+    parameters["mesh_density"] = 6
 
     displacement = -3
 
@@ -39,9 +39,15 @@ def test_cylinder_simulation():
     measured_force = problem.sensors[sensor.name].data[-1]
 
     # exact solution for free bc
-    exact_solution = np.pi * parameters['radius'] ** 2 * parameters['E'] * displacement / parameters['height']
-
-    #scaling factor due to an error resulting from the discretization
+    exact_solution = (
+        np.pi
+        * parameters["radius"] ** 2
+        * parameters["E"]
+        * displacement
+        / parameters["height"]
+    )
+
+    # scaling factor due to an error resulting from the discretization
     rel_discretization_error = 1.012722
 
-    assert measured_force == pytest.approx(rel_discretization_error*exact_solution)
+    assert measured_force == pytest.approx(rel_discretization_error * exact_solution)

From 7c949aaf26a4d91cb43e64dc535f54c60c257b61 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20F=2E=20Unger?= <joerg.unger@bam.de>
Date: Thu, 10 Nov 2022 17:30:19 +0100
Subject: [PATCH 3/4] format test_cylinder_simulation removing empty lines

---
 tests/emoduls_simulation/test_cylinder_simulation.py | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/tests/emoduls_simulation/test_cylinder_simulation.py b/tests/emoduls_simulation/test_cylinder_simulation.py
index 6eabcebda..bfdd1072d 100644
--- a/tests/emoduls_simulation/test_cylinder_simulation.py
+++ b/tests/emoduls_simulation/test_cylinder_simulation.py
@@ -6,10 +6,9 @@
 
 
 def test_cylinder_simulation():
-    """Tesing the cylinder simulation
+    """Testing the cylinder simulation
 
     This test is checking if the conda package is correctly installed"""
-
     parameters = fenics_concrete.Parameters()  # using the current default values
 
     parameters["E"] = 3000

From cbb7cd46bc582e375616f693511efac0dd856faf Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20F=2E=20Unger?= <joerg.unger@bam.de>
Date: Thu, 10 Nov 2022 17:31:57 +0100
Subject: [PATCH 4/4] format test_cylinder_simulation

---
 tests/emoduls_simulation/test_cylinder_simulation.py | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/tests/emoduls_simulation/test_cylinder_simulation.py b/tests/emoduls_simulation/test_cylinder_simulation.py
index bfdd1072d..09527a9f2 100644
--- a/tests/emoduls_simulation/test_cylinder_simulation.py
+++ b/tests/emoduls_simulation/test_cylinder_simulation.py
@@ -1,13 +1,10 @@
 import numpy as np
-
 import fenics_concrete
-
 import pytest
 
 
 def test_cylinder_simulation():
     """Testing the cylinder simulation
-
     This test is checking if the conda package is correctly installed"""
     parameters = fenics_concrete.Parameters()  # using the current default values