No module found

[olluarb23]

---

ModuleNotFoundError Traceback (most recent call last)
Cell In[3], line 1
----> 1 from covidsimulation.regions.br_saopaulo import params as br_saopaulo_params
2 from covidsimulation import run_simulations, plot, Stats
3 from tqdm import tqdm

File ~/Documents/covidsimulation/covidsimulation/init.py:3
1 from .stats import Stats
2 from .plot import plot
----> 3 from .simulation import SimulationConstants, seed, choice, logit_transform_value
4 from .simulation_engine import run_simulations
5 from .parameters import Parameters

ModuleNotFoundError: No module named 'covidsimulation.simulation'

[olluarb23]

Also an error when ! ./setup.sh was executed....See below:

Ignoring dataclasses: markers 'python_version < "3.7"' don't match your environment
Ignoring python-dateutil: markers 'python_version < "3.7"' don't match your environment
Requirement already satisfied: Cython==0.29.16 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from -r requirements.txt (line 1)) (0.29.16)
Requirement already satisfied: ipywidgets in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from -r requirements.txt (line 3)) (8.0.4)
Requirement already satisfied: matplotlib in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from -r requirements.txt (line 4)) (3.8.0)
Requirement already satisfied: numpy in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from -r requirements.txt (line 5)) (1.26.2)
Requirement already satisfied: pandas in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from -r requirements.txt (line 6)) (2.1.1)
Requirement already satisfied: plotly in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from -r requirements.txt (line 7)) (5.9.0)
Requirement already satisfied: pytest in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from -r requirements.txt (line 8)) (7.4.0)
Requirement already satisfied: scipy in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from -r requirements.txt (line 10)) (1.11.4)
Requirement already satisfied: simpy in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from -r requirements.txt (line 11)) (4.1.1)
Requirement already satisfied: smart_open in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from -r requirements.txt (line 12)) (5.2.1)
Requirement already satisfied: tqdm in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from -r requirements.txt (line 13)) (4.65.0)
Requirement already satisfied: ipykernel>=4.5.1 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from ipywidgets->-r requirements.txt (line 3)) (6.25.0)
Requirement already satisfied: ipython>=6.1.0 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from ipywidgets->-r requirements.txt (line 3)) (8.15.0)
Requirement already satisfied: traitlets>=4.3.1 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from ipywidgets->-r requirements.txt (line 3)) (5.7.1)
Requirement already satisfied: widgetsnbextension~=4.0 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from ipywidgets->-r requirements.txt (line 3)) (4.0.5)
Requirement already satisfied: jupyterlab-widgets~=3.0 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from ipywidgets->-r requirements.txt (line 3)) (3.0.9)
Requirement already satisfied: contourpy>=1.0.1 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from matplotlib->-r requirements.txt (line 4)) (1.2.0)
Requirement already satisfied: cycler>=0.10 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from matplotlib->-r requirements.txt (line 4)) (0.11.0)
Requirement already satisfied: fonttools>=4.22.0 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from matplotlib->-r requirements.txt (line 4)) (4.25.0)
Requirement already satisfied: kiwisolver>=1.0.1 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from matplotlib->-r requirements.txt (line 4)) (1.4.4)
Requirement already satisfied: packaging>=20.0 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from matplotlib->-r requirements.txt (line 4)) (23.1)
Requirement already satisfied: pillow>=6.2.0 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from matplotlib->-r requirements.txt (line 4)) (10.0.1)
Requirement already satisfied: pyparsing>=2.3.1 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from matplotlib->-r requirements.txt (line 4)) (3.0.9)
Requirement already satisfied: python-dateutil>=2.7 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from matplotlib->-r requirements.txt (line 4)) (2.8.2)
Requirement already satisfied: pytz>=2020.1 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from pandas->-r requirements.txt (line 6)) (2023.3.post1)
Requirement already satisfied: tzdata>=2022.1 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from pandas->-r requirements.txt (line 6)) (2023.3)
Requirement already satisfied: tenacity>=6.2.0 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from plotly->-r requirements.txt (line 7)) (8.2.2)
Requirement already satisfied: iniconfig in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from pytest->-r requirements.txt (line 8)) (1.1.1)
Requirement already satisfied: pluggy<2.0,>=0.12 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from pytest->-r requirements.txt (line 8)) (1.0.0)
Requirement already satisfied: appnope in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from ipykernel>=4.5.1->ipywidgets->-r requirements.txt (line 3)) (0.1.2)
Requirement already satisfied: comm>=0.1.1 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from ipykernel>=4.5.1->ipywidgets->-r requirements.txt (line 3)) (0.1.2)
Requirement already satisfied: debugpy>=1.6.5 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from ipykernel>=4.5.1->ipywidgets->-r requirements.txt (line 3)) (1.6.7)
Requirement already satisfied: jupyter-client>=6.1.12 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from ipykernel>=4.5.1->ipywidgets->-r requirements.txt (line 3)) (8.6.0)
Requirement already satisfied: jupyter-core!=5.0.,>=4.12 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from ipykernel>=4.5.1->ipywidgets->-r requirements.txt (line 3)) (5.5.0)
Requirement already satisfied: matplotlib-inline>=0.1 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from ipykernel>=4.5.1->ipywidgets->-r requirements.txt (line 3)) (0.1.6)
Requirement already satisfied: nest-asyncio in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from ipykernel>=4.5.1->ipywidgets->-r requirements.txt (line 3)) (1.5.6)
Requirement already satisfied: psutil in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from ipykernel>=4.5.1->ipywidgets->-r requirements.txt (line 3)) (5.9.0)
Requirement already satisfied: pyzmq>=20 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from ipykernel>=4.5.1->ipywidgets->-r requirements.txt (line 3)) (25.1.0)
Requirement already satisfied: tornado>=6.1 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from ipykernel>=4.5.1->ipywidgets->-r requirements.txt (line 3)) (6.3.3)
Requirement already satisfied: backcall in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from ipython>=6.1.0->ipywidgets->-r requirements.txt (line 3)) (0.2.0)
Requirement already satisfied: decorator in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from ipython>=6.1.0->ipywidgets->-r requirements.txt (line 3)) (5.1.1)
Requirement already satisfied: jedi>=0.16 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from ipython>=6.1.0->ipywidgets->-r requirements.txt (line 3)) (0.18.1)
Requirement already satisfied: pickleshare in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from ipython>=6.1.0->ipywidgets->-r requirements.txt (line 3)) (0.7.5)
Requirement already satisfied: prompt-toolkit!=3.0.37,<3.1.0,>=3.0.30 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from ipython>=6.1.0->ipywidgets->-r requirements.txt (line 3)) (3.0.36)
Requirement already satisfied: pygments>=2.4.0 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from ipython>=6.1.0->ipywidgets->-r requirements.txt (line 3)) (2.15.1)
Requirement already satisfied: stack-data in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from ipython>=6.1.0->ipywidgets->-r requirements.txt (line 3)) (0.2.0)
Requirement already satisfied: pexpect>4.3 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from ipython>=6.1.0->ipywidgets->-r requirements.txt (line 3)) (4.8.0)
Requirement already satisfied: six>=1.5 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from python-dateutil>=2.7->matplotlib->-r requirements.txt (line 4)) (1.16.0)
Requirement already satisfied: parso<0.9.0,>=0.8.0 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from jedi>=0.16->ipython>=6.1.0->ipywidgets->-r requirements.txt (line 3)) (0.8.3)
Requirement already satisfied: platformdirs>=2.5 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from jupyter-core!=5.0.,>=4.12->ipykernel>=4.5.1->ipywidgets->-r requirements.txt (line 3)) (3.10.0)
Requirement already satisfied: ptyprocess>=0.5 in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from pexpect>4.3->ipython>=6.1.0->ipywidgets->-r requirements.txt (line 3)) (0.7.0)
Requirement already satisfied: wcwidth in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from prompt-toolkit!=3.0.37,<3.1.0,>=3.0.30->ipython>=6.1.0->ipywidgets->-r requirements.txt (line 3)) (0.2.5)
Requirement already satisfied: executing in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from stack-data->ipython>=6.1.0->ipywidgets->-r requirements.txt (line 3)) (0.8.3)
Requirement already satisfied: asttokens in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from stack-data->ipython>=6.1.0->ipywidgets->-r requirements.txt (line 3)) (2.0.5)
Requirement already satisfied: pure-eval in /Users/mathdept/anaconda3/lib/python3.11/site-packages (from stack-data->ipython>=6.1.0->ipywidgets->-r requirements.txt (line 3)) (0.2.2)
running build_ext
building 'covidsimulation.simulation' extension
clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mathdept/anaconda3/include -arch arm64 -fPIC -O2 -isystem /Users/mathdept/anaconda3/include -arch arm64 -I/Users/mathdept/anaconda3/lib/python3.11/site-packages/numpy/core/include -I/Users/mathdept/anaconda3/include/python3.11 -c covidsimulation/simulation.cpp -o build/temp.macosx-11.1-arm64-cpython-311/covidsimulation/simulation.o -O3 -std=c++11
covidsimulation/simulation.cpp:227:12: fatal error: 'longintrepr.h' file not found
#include "longintrepr.h"
^~~~~~~~~~~~~~~
1 error generated.
error: command '/usr/bin/clang' failed with exit code 1
running install
/Users/mathdept/anaconda3/lib/python3.11/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

    ********************************************************************************
    Please avoid running ``setup.py`` directly.
    Instead, use pypa/build, pypa/installer or other
    standards-based tools.

    See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
    ********************************************************************************

!!
self.initialize_options()
/Users/mathdept/anaconda3/lib/python3.11/site-packages/setuptools/_distutils/cmd.py:66: EasyInstallDeprecationWarning: easy_install command is deprecated.
!!

    ********************************************************************************
    Please avoid running ``setup.py`` and ``easy_install``.
    Instead, use pypa/build, pypa/installer or other
    standards-based tools.

    See https://github.com/pypa/setuptools/issues/917 for details.
    ********************************************************************************

!!
self.initialize_options()
running bdist_egg
running egg_info
writing covidsimulation.egg-info/PKG-INFO
writing dependency_links to covidsimulation.egg-info/dependency_links.txt
writing top-level names to covidsimulation.egg-info/top_level.txt
reading manifest file 'covidsimulation.egg-info/SOURCES.txt'
writing manifest file 'covidsimulation.egg-info/SOURCES.txt'
installing library code to build/bdist.macosx-11.1-arm64/egg
running install_lib
running build_py
running build_ext
building 'covidsimulation.simulation' extension
clang -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/mathdept/anaconda3/include -arch arm64 -fPIC -O2 -isystem /Users/mathdept/anaconda3/include -arch arm64 -I/Users/mathdept/anaconda3/lib/python3.11/site-packages/numpy/core/include -I/Users/mathdept/anaconda3/include/python3.11 -c covidsimulation/simulation.cpp -o build/temp.macosx-11.1-arm64-cpython-311/covidsimulation/simulation.o -O3 -std=c++11
covidsimulation/simulation.cpp:227:12: fatal error: 'longintrepr.h' file not found
#include "longintrepr.h"
^~~~~~~~~~~~~~~
1 error generated.
error: command '/usr/bin/clang' failed with exit code 1